Bacteroides thetaiotaomicron VPI-5482: BT_2521
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Entry
BT_2521 CDS
T00122
Name
(GenBank) RNA polymerase sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bth
Bacteroides thetaiotaomicron VPI-5482
Pathway
bth02020
Two-component system
bth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bth00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BT_2521
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BT_2521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bth03021
]
BT_2521
Transcription machinery [BR:
bth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BT_2521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
LacI
Peptidase_U57
Rx_N
Motif
Other DBs
NCBI-ProteinID:
AAO77628
UniProt:
Q8A4S6
LinkDB
All DBs
Position
complement(3144919..3146403)
Genome browser
AA seq
494 aa
AA seq
DB search
MAQGSRQIQSQAQQQIQTLSPQQILVVKLLELPAVELEDRIHAELLENPALEEGKEDAAT
DEYAGGVSPEEGMDNDANDYDSLSDYLTEDDIPDYKLQENNRSRDEQAEDIPFSDATSFY
EILKEQLRERNLTEHQCELVEYLIGSLDDDGLLRKSLESICDELAIYAGIESTEEELEEA
LCILQDFDPAGIGARNLQECLMIQILRKKSEEKKPSPILNLEERIISDCYEEFTRKHWEK
IIKKLDVREETFNEAIAEITKLNPRPGASLGETIGRNLQQIVPDFLVDTYDDGTINVSLN
NRNVPELRMSRDFTEMVEEHTKNKANQSKESKEAMMFLKQKMDAAQGFIDAVKQRQNTLM
TTMQAIIDLQRPFFLEGDESLLKPMILKDVAERTGLDISTISRVSNSKYVQTNFGIYPLK
FFFSDGYTTEDGEEMSVREIRKILKECIDGEDKKKPLTDDELADILKEKGYPIARRTVAK
YRQQLNIPVARLRK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaggttcccgtcaaatacaatcgcaggcgcaacagcagatacaaacgctatcg
ccacagcagattctggtcgtgaagttgttggagcttcccgcagttgagctggaagaccgt
atccatgctgaactattggaaaatccggcgcttgaagaaggcaaagaagacgctgctaca
gatgaatatgccggtggcgtcagtccggaagaaggcatggataacgatgccaatgattat
gattctttaagtgattatctcaccgaagacgatatccccgactataaattgcaggagaac
aaccgctcgcgggacgagcaggcggaagatattcctttctccgacgccacctctttttat
gaaatcctgaaagaacaactccgtgaacgtaacctgaccgaacaccaatgcgaactggtg
gaatatctgatcggttcgctggacgatgacggactgctccgtaaatcgctggaaagtatc
tgtgacgaactggctatctacgccggtatcgaatctacggaagaagaactggaagaggct
ctgtgcatcctgcaggactttgacccggcaggtatcggagcacgcaaccttcaggaatgt
ctgatgatacagattctccgcaagaagagcgaagagaagaagccgtcgccgatattgaac
ctggaagagcgcatcatcagtgactgttatgaagaatttacccggaagcactgggagaaa
atcattaagaaactggatgtcagagaagagactttcaatgaggcgattgccgaaataacc
aagttgaatccccgtccgggcgcttcgctcggagagaccatcggaagaaacctacagcag
attgttcccgattttctggtggatacctacgatgacggaacgattaacgtaagcctgaat
aaccgcaatgttcccgaactccggatgagccgcgactttaccgagatggtggaggagcat
accaaaaataaggcgaaccagtccaaagagtcgaaagaagccatgatgttcctgaaacag
aagatggatgcggcacaaggatttatcgatgcggtgaagcagcggcagaatacattgatg
actaccatgcaggcgattatcgacttgcaacgtcctttcttcctcgaaggcgacgagtca
ttgctgaaaccgatgattctcaaagatgtggcagaacgtaccggactggatatctctacg
atttcccgtgtcagcaacagcaaatacgtacagaccaacttcggcatctatccgcttaaa
ttcttcttcagcgatggctatacgacggaagacggagaggaaatgtccgtacgcgagata
cgtaagattctgaaagaatgcattgacggagaagacaaaaagaaaccgctgacagatgac
gaactggcggatatcctgaaggaaaaaggctatcctatcgcccgccgtacggtggcgaaa
taccgtcagcagttgaatataccggtggcaagactgagaaagtga
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