KEGG   Burkholderia thailandensis E254: BTN_2852
Entry
BTN_2852          CDS       T03380                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bthe  Burkholderia thailandensis E254
Pathway
bthe02024  Quorum sensing
bthe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bthe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BTN_2852 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BTN_2852 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bthe03019]
    BTN_2852 (hfq)
   03036 Chromosome and associated proteins [BR:bthe03036]
    BTN_2852 (hfq)
Messenger RNA biogenesis [BR:bthe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BTN_2852 (hfq)
Chromosome and associated proteins [BR:bthe03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BTN_2852 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AIT21372
LinkDB
Position
1:complement(3214819..3215058)
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEAAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcac
gtgccggtttcgatctatctcgtgaacggcatcaagctccaagggaacatcgaatcgttc
gaccagtacgtcgtgttgctccggaacacggttacccagatggtttacaagcacgccatt
tcgacggtcgtgccggcgcgtccggtgaacttccacccggatgcggaagcagcgtcctaa

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