Bifidobacterium thermophilum: D805_0459
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Entry
D805_0459 CDS
T02505
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
btp
Bifidobacterium thermophilum
Pathway
btp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
btp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D805_0459 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btp03021
]
D805_0459 (rpoB)
03400 DNA repair and recombination proteins [BR:
btp03400
]
D805_0459 (rpoB)
Enzymes [BR:
btp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D805_0459 (rpoB)
Transcription machinery [BR:
btp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D805_0459 (rpoB)
DNA repair and recombination proteins [BR:
btp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D805_0459 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGH40726
UniProt:
M4RB82
LinkDB
All DBs
Position
568781..572350
Genome browser
AA seq
1189 aa
AA seq
DB search
MAAEQATTNTTKVIARADEHDIKLHKASDRVNFGSIREPIDVPYLLGVQTDSFDWLIGNE
RWKKRVEEDEKNGTNTVPHVSGLDEVFQEISPIENFTQTMSLTFSDPYFEEPRHTVQECK
EKDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSP
GVYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRKQSAIVFLMAIGM
TKQEIAESFKDYPLVLDALAKETSINTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFN
TKRYDLARVGRYKINRKLGLERDYNDRSLSREDIIATIKYLVTLHAGDKTFPGMRDGEPV
DLRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIR
PVNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFG
RMCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTDEVVYMTADREAEHVI
AQANQELDENGNFVSKEALVRDAQGEAEDVPVEMVDYMDVSPRQMVSVGASLIPFLEHDE
GHRALMGTNMQRQAVPLVKSERPLVGTGSEWRAAVDSGDVILAEKDGVVTYVSADIIRTM
NDDGTQSSYKLAKFQRSNQTTCYNQVPLVKHGERVEKGTVLADGPATEKGDLALGKNLLI
AFMPWNGYNYEDAVIISQRLVRDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAV
ANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPH
GETGTVIAVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISR
ILPEEDMPFMADGTPIDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDISIDPDVEAAWK
KYVPEGAEKGAPGTPVATPVFDGVRPDTLKGLLKCTLPDKDGNKLVGEDGKAQLFDGRTG
EPFPKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLHEMMTTKSDDVDGRVRAYGAIVKGENLPPAGIPESFKVLLKEMQSLALNVE
VLNADGQAIDMREEDDDPASNSNDLGFNIGARPDASAKEDQAAEEPEYK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgaacaagctacgacgaacaccaccaaagtcatcgcacgtgccgacgagcat
gacatcaaactgcacaaggcgtcggatcgcgtgaatttcggctccatccgtgagcccatc
gatgtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgag
cgctggaagaagcgcgtcgaggaagacgaaaagaacggcaccaacaccgtgccgcacgtt
tccggtcttgacgaggtcttccaggagatttctccgatcgagaacttcacccagaccatg
agcctgaccttctccgacccgtacttcgaagagccgcgtcacacggtccaggagtgcaag
gagaaggattacacctattccgcgccgctgtatgtgaacgctgagttcgaaaacggcgat
accggcgagatcaagagccagaccgtcttcatgggcgatttcccgctgcagaccccgcac
ggcaccttcatcatcggcggcaccgagcgtgtaatcgtttcgcagctcgtgcgttctcct
ggcgtgtatttcgaccgtcagcaggaccgtacctccgacaaggaggtcttcggcgcgaag
atcatcccgagccgcggcgcatggctcgagttcgagatcgacaagcgcgacgtcctcggc
gtgcgcgtggaccgcaagcgcaagcagtccgcgatcgtgttcctcatggccatcggcatg
accaagcaggagatcgccgagtccttcaaggactacccgctcgtgcttgacgcgctggcg
aaggaaacctcgatcaacacgcaggacgaggccctcgttgacctgtaccgcaagattcgt
ccggcggacaccccgacccccgaggctggcaagaacctgctggattccttctacttcaac
accaagcgctacgatctggcacgcgtcggccgctacaagatcaaccgcaagctgggcctt
gagcgtgattacaacgatcgcagcctgagccgtgaggacatcatcgccaccatcaagtac
ctggtgactttgcatgccggcgacaagaccttcccgggcatgcgtgacggcgagccggtc
gatctgcgtgtggacgtcgacgatatcgatcacttcggcaaccgtcgtatccgccaggtc
ggcgagctgatccaaaaccagctgcgcactggcctgagccgtatggagcgtgtcgtgcgc
gaacgcatgaccacccaggacgccgaggccatcaccccgcagtccctgatcaacattcgc
ccggtcaacgcgaccatcaaggagttcttcggaacttcccagctgtcccagttcatggac
cagaacaacccgctggccggcgtgacgaacaagcgtcgtctgtccgccctcggccccggc
ggcctgtcccgtgaccgcgcatccatggaagtgcgagacgtgcacccgtcccacttcggc
cgtatgtgcccgatcgaatcccctgaaggcccgaacatcggcctgatcggctcgctggcg
accttcggccgcatcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaac
ggccatgtgaccgacgaggtcgtctacatgaccgccgaccgtgaggccgagcacgtcatc
gcgcaggccaatcaggagcttgacgagaacggcaacttcgtgtccaaggaagcccttgtg
cgtgacgcgcagggcgaggcggaagatgtcccggtcgagatggtcgactacatggatgtc
tccccgcgtcagatggtgtcggtcggcgcctccctgatcccgttcctggagcacgatgaa
ggccaccgagcgctgatgggtaccaacatgcagcgtcaggcggtcccgctggtcaagtcc
gagcgtccgctcgtgggcaccggctccgaatggcgtgcagccgttgattccggcgatgtg
atcctcgctgagaaggatggcgtggtcacctacgtgtccgccgacatcatccgcacgatg
aacgacgacggcacgcagtccagctacaagctcgccaagttccagcgttccaaccagacc
acctgctacaaccaggtcccgcttgtcaagcatggcgagcgcgtggagaagggcaccgtc
ctcgcggatggcccggccaccgagaagggcgatctggcactgggcaagaacctgctcatc
gcgttcatgccttggaacggctacaactacgaggacgctgtgatcatctcccagcgtctg
gtgcgcgacgacaccctgtcctcgatccacatcgaagagtacgagatcgacgcccgtgaa
accaagctcggtgctgaggaaatcacccgcgacctgccgaacgtcggcgaggacgcggtc
gcgaaccttgacgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgatatc
ctcgtcggcaaggtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctg
cgcgccatcttcggcgagaagagccgcgaagttcgtgatacctcgctgcgcgtgccgcac
ggcgagaccggtactgtcatcgcggtcaaggaaatcacccgcgaggatgccgaggaggac
ggcgacgagctgcccaacggcgtcaaccagatgatccgcgtgtacatcgcccagcaccgc
aagattacgcagggcgacaagctctctggccgccacggcaacaagggcgtcatctcccgg
attcttccggaagaggatatgccgttcatggccgacggtaccccgatcgacatcatgctc
aatccgctaggcgtgccgagccgaatgaacctgggccaggtgctcgagcttcacttgggc
tggattgcacacgccggctgggatatcagcatcgacccggatgttgaggccgcttggaag
aagtacgtgcctgaaggcgccgaaaagggcgcgcctggcaccccggtcgcgaccccggtg
ttcgacggcgtccgtccggacactttgaagggcttgctcaagtgcacgctgccggacaag
gacggcaacaagctcgtgggcgaggacggcaaggcgcaactgtttgacggccgcaccggc
gaaccgttcccgaagccgatctccgtgggctacatgtacatgctcaagctccaccacctc
gtagacgacaagatccacgcgcgttccaccggcccgtactcaatgatcacgcagcagccg
ctcggcggcaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggccctt
gaggcttacggcgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtc
gacggccgcgtgcgcgcctacggagccatcgtgaagggcgagaacctgccgccggcaggc
atcccggagtccttcaaggtgcttctgaaggaaatgcagtcgctcgccctgaacgtcgag
gtgcttaacgccgacggccaggcgatcgacatgcgcgaggaagacgacgacccggcttcc
aactccaacgatctcggcttcaacatcggtgcccgcccggacgcctccgccaaggaggat
caggccgcggaagagcccgaatacaagtga
DBGET
integrated database retrieval system
