Buchnera aphidicola LL01 (Acyrthosiphon pisum): CWO_01965
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Entry
CWO_01965 CDS
T01828
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bua
Buchnera aphidicola LL01 (Acyrthosiphon pisum)
Pathway
bua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWO_01965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bua03019
]
CWO_01965
03009 Ribosome biogenesis [BR:
bua03009
]
CWO_01965
Enzymes [BR:
bua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWO_01965
Messenger RNA biogenesis [BR:
bua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWO_01965
Ribosome biogenesis [BR:
bua03009
]
Prokaryotic type
rRNA helicases
CWO_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
AAA_22
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
ADP66191
LinkDB
All DBs
Position
complement(410378..412183)
Genome browser
AA seq
601 aa
AA seq
DB search
MTHIESTFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAF
SLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKE
HQTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLE
AEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA
TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTL
AAALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYRI
EVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRIL
NKPINMKLLRDSRHYENKTTHRSIFNKDKNSNRRVSDGSFNKSNSPKKTEFKSSFFRRRN
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgactcatattgaaagcacattttcttttcttggtttaaatccttttattattcaatct
ttaaatgaaatgggatatgttaaaccttcccctattcaagcatcttgtattcccttgctt
ttagaaggacgtgatgtattaggaatggcacaaactggaagtggcaaaacggctgctttt
tcattaccgctattacacaatcttaatattaatttaaaagctcctcaaatattagtatta
gctcctacaagagaattagccgtccaagtagcagaagcattttcagatttttctaaatac
atgattggaattcatgtgttacctttgtatggtggtcaaagatacgaactccaattacgt
gcactacgacaaggacctcaaattgttgtaggaactccaggtagattattagatcattta
aaaagagggacacttaatctttctaatttacatggattagttttagatgaagcagatgag
atgttacgtatgggttttattgaagatgtagagacaattatggctcaaattccgaaggaa
catcaaactgcattattttcagctactatgccagaagcaattcgtcgtatttctaaacga
ttcatgagaaatccaaaagaaataaaaatacagtccaatattactacacgtcctgatatc
aaacaaagttattggatggtatatggtcgaaaaactgatgcattaattcgttttttagaa
gccgaagatttttctgctacaatcatttttgtaagaactaaaaatgcaactttagaagta
tctgaagcattagaacgtaatggatataatagtgccgcgttaaatggagatatgaatcaa
gcattgcgtgaacaaactctcgaaagattaaaaaatggtagattagatattttaattgct
acagatgttgcggcacgtggtttagatgttgatcgtataagttttgttattaattatgat
attcctatggactcagaatcttatgttcatcgtataggtcgaacaggtcgagcaggtcga
gcaggtcgagcgttattatttgttgaaaatcgtgaacgtcgtttgctacgtaatattgaa
cgtactatgaaacaatctattcccgaagtacaattacctaaagtagaattattatgtcaa
agacgtcttgaacaattcgcaaaaaaagtacaacaacaattagaaagccgagatttagat
gaatatagtgctttattagataaattatactctacagatgatttagatataaaaacttta
gcagccgctttgttaaaaatggctcaaggagaacgtcctttaattattaaacctgatgta
attaaacgtcagtctcgtgatttattgttccaagacgatcgtcgacgcgaagacaaccga
aacagtcgaacccgtcgcgatcgtcgtgatatcaataaagacgcagagttatatcgtatt
gaagtaggtcgtaatgatggagttgaagtacgtcatatagttggagcaattgctaatgaa
ggaaatattaatagtcgtaatattggtaatattaaacttttttcttcttattcgacaatt
gaattgcctaagggaatgtctaaagatttattacaaacctttaatcgtactagaatatta
aataaaccaattaatatgaaattattacgagattcaagacattatgaaaataagacaact
catcgttctatttttaacaaagataaaaatagtaaccgtcgtgtttctgatggtagtttc
aataaatctaactctcctaaaaaaactgaatttaagtcatctttttttcgtcgtagaaat
gtttaa
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