Burkholderia sp. PAMC 26561: AXG89_04395
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Entry
AXG89_04395 CDS
T05481
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXG89_04395 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bum03021
]
AXG89_04395 (rpoB)
03400 DNA repair and recombination proteins [BR:
bum03400
]
AXG89_04395 (rpoB)
Enzymes [BR:
bum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXG89_04395 (rpoB)
Transcription machinery [BR:
bum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXG89_04395 (rpoB)
DNA repair and recombination proteins [BR:
bum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXG89_04395 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Nif11
UbiD
Motif
Other DBs
NCBI-ProteinID:
AME23192
LinkDB
All DBs
Position
1:complement(940517..944623)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQETTSATQRKAEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEMPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFALMGE
GAQMEFVPERLRGEVARFDIQDREGNVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGETGEVIANANDEITETVLEKLRESKVKDIQTLYTNDLDQGPYISSTLRID
ETADRMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDEDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYVIAQANASLGEGGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGLVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DKVGRGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVAEDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFSRLARMLNGKIANGGPKKLAKGTAIDLPYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLQRQTKIEELRAFLTKIYNESGRQEELENFTDDEIVELAKNLREGVPFAT
PVFDGATEGEMERALDLAFPDDIAKQLGMTKSKNQVQLSDGRTGEPFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVAGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaaacgccccatc
gttcaccaggttccctttctgctggctacccagcttgaatcattcagcacctttctgcaa
gagaccaccagcgcaacacagcgcaaagcggaagggttgcaagcagcgttttcgtcggtg
ttcccaatcgtttcgcacaacgggtttgcgcgtctcgagttcgtaagctacatgctctcg
ccgccggcattcaacatcaaggaatgtcagcagcgtggtttgacgtactgctccgccttg
cgcgccaaggtgcgcctggtgctgctcgacaaggaatcgccgagcaagccggtcgtcaag
gaagtgaaggagcaagaagtctacatgggcgaaatgccgctcatgacgccgaccggttcg
ttcgtcatcaacggcacggaacgcgtgatcgtgtcccagttgcatcgttcgcctggtgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttctcggctcgt
atcatcccttaccgtggttcgtggctcgacttcgaattcgacccgaaggacgtgctgtat
ttccgcgtcgaccgccgccggaaaatgccggtgacgatcctgctgaaggctatcggcctg
acgccggaacagatcctcgcgaacttcttcgtattcgataacttcgcgctgatgggcgaa
ggcgcgcaaatggaattcgtgccggagcgtctgcgcggcgaagtcgcgcgtttcgacatc
caggatcgcgaaggcaacgtcattgtccagaaggacaagcggatcaacgccaagcacatt
cgcgacctcgaagccgcaaagacgaagttcatctcggtgccggaagactatttgctcggc
cgcgtgctggcgaagaacgtcgtggacggcgagacgggcgaagtgatcgcgaacgcaaac
gacgaaatcaccgaaaccgttctcgaaaagctgcgcgagtcgaaggtcaaggacatccag
acgctctacacgaacgatctggatcagggtccgtatatctcgtcgacgctgcgtatcgac
gaaacggccgaccgcatggctgcgcgtattgcgatttatcgcatgatgcgcccgggcgaa
ccgccgaccgaagaagccgtcgaagcgctgttcaaccggctgttctatagcgaagacgcg
tacgacctgtcgaaggtaggtcgtatgaagttcaatcgccgcgtgggccgtgacgaaatc
gttggcccgatgacgctgcaggatgaggacatcctcgcgaccatcaagattttggtcgag
ctgcgtaacggcaagggcgaagtcgatgacatcgatcacctgggcaatcgccgtgtgcgt
tgcgtcggtgaattggctgagaaccagttccgtgcgggcctcgtgcgcgtggagcgggct
gtgaaggaacgtctgggtcaggctgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatctcgtccgccattcgcgagttcttcggttcgtcgcagttgtcgcagttt
atggaccagacgaacccgttgtcggaaattacccacaagcgccgtgtatcggctcttgga
ccgggcggtttgacgcgtgaacgcgcaggctttgaagttcgcgacgtgcacccgactcac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactcg
ctcgcgctgtacgcgcacttgaacgaatacggtttcctcgagacgccgtatcggaaagtg
gtggacggcaaggtgaccgatcagatcgattacctctcggcaatcgaagaaggccgttac
gtgatcgctcaggcgaacgcgtcgctgggcgaaggcggcacgctgaccgacgagctggtt
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccagaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggctgcttcgctgattccgttccttgaacacgat
gacgcgaaccgcgcattgatgggctcgaacatgcaacggcaggcggttccttgcctgcgt
cctgaaaaggccgtggtcggtacgggtatcgaacgtacggtggcggtcgactcgggtacg
accgttcaggcgttccgcggcggtctcgtggattacgtcgatgccggccgtatcgtgatc
cgcgtgaacgatgacgaagcagttgccggcgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtaaaggttggc
gacaaggttggccgtggcgacgtggtggctgacggtgcatcgaccgatctgggcgagctc
gcgcttggccagaacatgctcgtcgcgttcatgccgtggaacggctacaacttcgaagat
tcgatcctgatctcggagaaggtcgttgccgaagaccgttacacgtcgatccacatcgaa
gaactgaatgtggttgcacgcgacacgaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggctgaagtgcaactcggtcgtctcgatgagtcgggcattgtgtacatcggc
gctgaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccaa
ctgacgccggaagaaaagctgctgcgcgcaatcttcggtgagaaggcgtcggacgtgaag
gatacgtcgctgcgcgtgccgtctggcatgagcggaacggtgatcgacgtgcaagtgttc
acgcgcgaaggcattacgcgtgacaagcgtgcacaacagatcatcgatgacgaactgaag
cgttatcgcctggacttgaacgaccagttgcgcattgtggaaggcgacgctttctcgcgt
ctcgcccgtatgctcaacggcaaaatcgcaaacggcggcccgaagaagctggcgaagggc
acggcgatcgacctgccgtacctggaagatctcgatcactaccactggttcgacatccgt
ctggccgacgaagaagctgctgcgcaactggaagccatcaaggattccatcgaacaaaaa
cgtcaccagttcgacctggcgttcgaagagaagcgcaagaagctgacgcaaggcgacgaa
ctgccgccgggcgtgctgaaaatggtcaaggtgtacctggctgtcaagcgtcgtctgcaa
ccgggcgacaagatggccggccgtcacggtaacaagggtgtggtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggccgacgtcgtgctgaacccgctg
ggcgtgccttcacggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctgggatggcgtatcggtgaaatgctgcagcgtcagaccaagatcgaagaactg
cgtgcgttcctgacgaagatctacaacgagtcgggccgccaggaagagctggaaaacttc
accgacgacgaaatcgtcgaattggcgaagaacctgcgcgaaggcgttccttttgcaacg
ccggtgttcgacggcgcgacggaaggcgaaatggaacgtgcgctggatctggcgttcccg
gacgacatcgcgaagcagctcggcatgacgaagtcgaagaatcaggtgcagttgagcgac
ggccgcacgggtgaaccgttcgaacggacggtcacggtgggctacatgcactacctgaaa
ctgcatcacctggtcgacgacaagatgcacgcccgttcgaccggaccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggcggccagcgtttcggtgagatggaa
gtgtgggcgctcgaagcatatggcgcttcgtacgtgctgcaagaaatgctgactgtgaag
tcggatgacgtggcgggtcgtaccaaggtgtatgagaacctggtcaagggtgaccacgtg
atcgatgccggcatgcctgagtcgttcaatgtgttggtgaaggaaatccggtcgctcggt
atcgacatcgacctggaccggaactaa
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