Burkholderia sp. JP2-270: DM992_13540
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Entry
DM992_13540 CDS
T07766
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
burk
Burkholderia sp. JP2-270
Pathway
burk02024
Quorum sensing
burk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM992_13540 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DM992_13540 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burk03019
]
DM992_13540 (hfq)
03036 Chromosome and associated proteins [BR:
burk03036
]
DM992_13540 (hfq)
Messenger RNA biogenesis [BR:
burk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DM992_13540 (hfq)
Chromosome and associated proteins [BR:
burk03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
DM992_13540 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
SelB_WH1
Motif
Other DBs
NCBI-ProteinID:
AWV00429
LinkDB
All DBs
Position
1:2865080..2865661
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AA seq
193 aa
AA seq
DB search
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGGGPRGPRTGGRPGGREGGGHSPYGSHGGPRESRGDGGGYGSREP
REGYGSREPREGYGSREPREGYGAPREPREPRESYGAPRDTGDASGNTTPSDARGGNGPV
IVTRRRRIVPDGQ
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcgcgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacgggatgtatcgagtcg
ttcgaccagtacctggtgatgctgcgcacccccgtgggtttgcaaggcatctacaagcgc
gcgatttccacgattcagctcgacacgggcggctcgcgcccgggcggcggcggcccccgc
ggcccgcgcaccggcgggcgccccggcggccgtgaaggcggcggccacagcccgtacggc
tcgcacggcggcccgcgcgaatcgcgtggcgacggcggcggctacggttcccgcgaaccg
cgcgaaggctatggctcccgcgagccgcgtgaaggttacggctcgcgtgaaccgcgcgaa
ggctacggcgcaccgcgcgaaccccgtgagccgcgcgaaagctacggcgcgccgcgcgac
accggcgacgcgtccggcaacacaacaccgtcggatgcacgcggcggcaacgggccggtg
atcgtcacgcgccgccggcgaatcgtgccggacggccagtaa
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