KEGG   Burkholderia sp. JP2-270: DM992_13540
Entry
DM992_13540       CDS       T07766                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
burk  Burkholderia sp. JP2-270
Pathway
burk02024  Quorum sensing
burk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:burk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM992_13540 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DM992_13540 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:burk03019]
    DM992_13540 (hfq)
   03036 Chromosome and associated proteins [BR:burk03036]
    DM992_13540 (hfq)
Messenger RNA biogenesis [BR:burk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DM992_13540 (hfq)
Chromosome and associated proteins [BR:burk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DM992_13540 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SelB_WH1
Other DBs
NCBI-ProteinID: AWV00429
LinkDB
Position
1:2865080..2865661
AA seq 193 aa
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGGGPRGPRTGGRPGGREGGGHSPYGSHGGPRESRGDGGGYGSREP
REGYGSREPREGYGSREPREGYGAPREPREPRESYGAPRDTGDASGNTTPSDARGGNGPV
IVTRRRRIVPDGQ
NT seq 582 nt   +upstreamnt  +downstreamnt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcgcgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacgggatgtatcgagtcg
ttcgaccagtacctggtgatgctgcgcacccccgtgggtttgcaaggcatctacaagcgc
gcgatttccacgattcagctcgacacgggcggctcgcgcccgggcggcggcggcccccgc
ggcccgcgcaccggcgggcgccccggcggccgtgaaggcggcggccacagcccgtacggc
tcgcacggcggcccgcgcgaatcgcgtggcgacggcggcggctacggttcccgcgaaccg
cgcgaaggctatggctcccgcgagccgcgtgaaggttacggctcgcgtgaaccgcgcgaa
ggctacggcgcaccgcgcgaaccccgtgagccgcgcgaaagctacggcgcgccgcgcgac
accggcgacgcgtccggcaacacaacaccgtcggatgcacgcggcggcaacgggccggtg
atcgtcacgcgccgccggcgaatcgtgccggacggccagtaa

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