Bombus vancouverensis nearcticus: 117153566
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Entry
117153566 CDS
T07628
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117153566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117153566
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117153566
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117153566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
117153566
NCBI-ProteinID:
XP_033183615
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVTNLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSCIDFSTG
ESPELSARDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKA
LGLTLVQEVAFAIALLHSENTEIRTLALEHVQKQLPELIKNYINSETSNRHHEEGLHDSL
PEVLHLILSQAFHSANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQTK
IELNMAVNQMDGNSLVELIMELGYGFTNSVEECRSALAGLGAREISPTCAARVLGHMARS
CSSLDDAGGLQSFWGNSGATQDANKEKSSDNAAPTTWNVEVFVQALKEIQSTLSWNEVIV
KLDHAEFVIKDRQGLNLLITGLRLGLQHQGYPPDMFPVELFYRHWDNIEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQISAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGSVSQECSEAIMTMVQNCSLMLSKSTMSRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASIGLGSSLGPPSSSAFNLSGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGSTTIGGLGRLGPPTGIEKARIPEASNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIERGLISSYMTLGLALRFVLDALRKPEGSKMYYFGITALDRFKSR
LKDYQTYCDHVRAIQHFSEFPPHLIEYIEYGFQGQEPPTRPQGPVLPKSLAAMLAPVTTP
YKTITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLK
LPEVYKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILHIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPALYLKDPEKLRNLEYQLSHPNKKSESNNNQQQTQGPIE
ELVGPTTAGTIVPQTAPANTTPSLPTGPPEPRFNYMDISVTGIANISQHITINNNLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLASISTNLKQAFLTAMMGTTPQQKELAEQAANVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLLKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPTVTAFAANPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLAAEVEVLLAAMGPVTPPPQHAALHSLLDSIILTRRSRDAGAAMTL
LKKAVEGLLDGPTITSGVIDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHITRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNSMATAFAMQLVQLYLIDERQTTH
VAESDLFHTIEILARIAHHRAPPEGILLFRLTNLIESLRLNHDTGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWISMHHNPTHARDPTKAFGMFVHQMNIHGILKT
DDLITRFFKLSTQMCVDSCYRALAETNSVECIVRAKCFHSLDAFVRLIALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDQEMRGTDFQQLPYHRIFIMLFLELCTPEPVLEAINYQV
LTAFCHTLHILRPAKASGFCYAWLDIVAHRVFIGRTLAITPQQKCWGMYAQLLIDLFKYL
ASYLRNTELAKPVHTLYRGTVRVLLVLLHDFPEFLCEYHYGFCDVIPLNCTQMKNIILSA
YPRSMRLPDPFTPNLTVNLLQQATHTPRILTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQDTGFRYNIPLMNALVLYVGTQAISFIRSKGHTPNMSAIAHSAHMDIFQNL
AVDLDTEGRYLFINAIMNQLRYPNTHTNYFCCTLLYLFVEANTQAIQEQITRVILERLVV
NRPHPWGLLVTFVELIKNPTYKFWTHEFIHCAPEIEKLFDSIAHSCRNLKDLESIREPNI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttatcttttactttgtcacaaatcagttatttggttacgaattta
aataagaaaaattttcgagacagctgccaagaaatatcagttctggtgcagtggaagggt
ttggaggcagacagacatttgctgcgctctttactctcgtgcatcgacttttctacagga
gagtcaccagaattaagtgcgagagattactttcaagtgcaacttctaaaacaagagtgt
actaatcttcttagcaaaccttcttttatttctaatctgtgctttgctatagaccatcca
tttcatcaacaaaagactttgaacccatcaccaaagttttttttacgtttaaaaaaggca
cttgggttaactctggtacaagaagttgcatttgcgattgcattgctccattctgaaaat
actgaaattcgtacattagctctagagcacgtacaaaaacagctgcctgaattgataaaa
aattatattaattctgaaacaagcaacagacatcacgaagaaggattgcacgattcatta
cctgaagttcttcatcttatattgtctcaagcttttcattcagccaatcaatttggcctt
tcatctgaagcaaaagaaaaatttctcaagaatttgaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtacccagacaacggggaaactccgcaaaccaaa
atcgaactaaacatggctgttaatcaaatggatgggaattctctagtagaattgattatg
gaattaggatatggattcactaacagtgttgaagaatgtcgatcagctttggctggttta
ggggctcgagaaatatctccaacatgcgcagcaagggttttaggtcatatggcacgtagc
tgtagtagtcttgatgatgctggaggattacaatcattttggggtaattcaggagctaca
caagatgcaaataaggaaaaatcaagtgataatgctgctcctactacatggaatgttgaa
gtttttgttcaagctttaaaagaaattcaatcaacattatcttggaatgaagtgatagtt
aaactagatcatgcagaatttgttatcaaagatagacaaggattgaatttgttgatcaca
ggattaaggttgggattgcaacatcaaggatatcctccagatatgtttcccgtggaactt
ttttatcgtcattgggataacatagaaggacagttttctttagtgcaacaaattttaaag
tgccctgatatattttgtttcgccgattatccatatcattctgtaactgttgatgtattg
aaagcagcaccagagagtgacagtaaggaagcacaaacttggaggtccttaaatgtagtt
gaattactcttgcatatggcagaaagaggactgtatggaccagttcaagaaatatttaaa
tggcccattcaacactgccctgatgttcttgtattagcattattacaaattagtgctcct
attacaatacttagacaagaattacttagtacattaatgcctatttttcttgggaatcat
ccaaattcagctgttattctacatcatgcatggcatggaaatacagttaaaataaaatct
attattatgcatgctatggcagaatggtatatacgtggagatcatgatcaaacaagacta
tctcgtattcttgatgttgctcaagacctcaaagcattaactcatttattgactgctcaa
tcgtatccatttgttattgatctagcctgtttggcttcaagaagagaatatttaaaatta
gaaaaatggttgactgataaaattagagaacaaggagaagtttttgttactgcttgtgta
aagtttttacaaagacgttgtcctcaagtaatgggacctggtataaaggaagatcttaca
gtaccaaaagcaagtcaacttccacaagaaacactaacaacaatgcttgcttgtttgcaa
gtatgcgctggaagtgtatctcaagaatgttccgaggcaataatgacaatggtacaaaat
tgtagtctaatgttgagtaaaagtacaatgagtagacctccaccaccaggagttttacga
catcgtggattggaaccttttaatccagcaactttgggaggacagttgttttcttcaaaa
caagtggatccgcttggaaatttaagttcaagtcttgcatctattggtttgggttccagt
cttggtccaccaagtagttctgcgtttaatttatcaggtgcacttggacctttagtatca
gcacctggctctccatctcgtctcatgggaccttctccaagtccatttccaatgttaccg
ttatcttcacagttgcattcaggaccagttggtacgcaaggaccatctgttttacctgga
agtacaacaatcggaggattaggacgacttggaccaccaacaggcattgaaaaagcaaga
atacctgaagcatcgaacttatttcctgatatggcacaaaatgtttccaaagaaattgaa
gatgaagcaaacagttactttcagcgaatatacaaccatccgccacatcctaccttatca
attgatgaagttcttgatatgttaaaaaaatttcaagattctggtagtaaaagagagaga
gaagtattcaactgtatgttgcgaaacttatttgaggaatatcgattttttcctcaatac
ccagataaagagttgcaaattacggcacaattattcggaggaattatcgaaagaggattg
attagtagctatatgacacttggattagctctgagatttgtattggatgcacttaggaaa
ccagaaggcagcaagatgtattactttggcataacagctctggatcggttcaaaagccgt
ttaaaagactaccaaacatactgtgatcacgtcagggcaattcaacatttcagtgagttc
ccaccacatttaattgagtatatagaatatggattccaggggcaggagcctcccacaaga
cctcaaggtccagttctcccaaaatctttagcagctatgctggcaccagttactacacca
tataaaactattacaacaacaacaataacgacaagcactactcaagcgaaatcatccacg
actccaaccacctctctctcagccagaccttctattgctaatgcaacaaacattgatacg
ttattagtagcaaccgataaagaagaaaagataacaacacctccagaagctttgcaagat
aaaacagcattcatcttcaataatcttagtcaacttaatttacaacaaaaatgtgacgaa
attcgagaaattgtcacagaagagtattggccttggatggctcagtatttagtaatgaaa
cgtgcaagcatagaattaaatttccatgctttatattcaaattttctggactgtttgaaa
ttaccagaagtgtacaaaatggttactagagaaacatttagaaacataaaggttttatta
cggagtgataaaggaatagcgaatttttctgatcgctcacttttaaaaaatttaggtcat
tggctaggaatgttaactcttggcagaaataaaccgattttacacattgatatagatcta
aaaagtttacttgtcgaagcatatcacaaaggtcaacaagaacttctttatgttgttcca
tttgttgctaaagtacttgaaagttgtgcaaaaagtcgtgtttttcgtccacctaatcct
tggacaatggcaattatgaatgtattagcagaattacatcaagaaccagacctaaaattg
aatttaaaattcgagatagaagtattatgcaaaaatttaagcattgatgtaggtgaatta
aaacctgcgctttatttaaaagatccagaaaaattacggaacttagaatatcagctatca
catcctaataaaaagtctgaatcaaacaacaatcagcaacaaacacaaggtcctattgaa
gaattggttggtcctactacagctggaactattgttccacaaacagctccagcaaataca
acaccatctttacctactggtccaccagagccgcgttttaattatatggatatttctgta
acagggattgctaatatttctcaacatatcaccattaataataatttgccattattccaa
acgcacccacatttgaaacaatttgttcgtccagctgttgaaagagcaattcaagaatgg
attcatcctgtagttgatcgatcgatcaaaatagctctaaccactagcgaacaaattgtg
agaaaagactttgcattagatccagaagaagttcgaatgagaacagcagcaagacatatg
gttcgtaatttaactgctggaatggctatgattacttgccgtgatcaagttttggcgtca
attagtacaaatttaaaacaagcttttttaactgcaatgatgggcaccaccccacaacaa
aaagaacttgcagaacaagcagctaatgtagtagctgctgataatatggaacttgcttgc
gcatttgtacaaaaaacagctattgaaaaggcaattccagaaatggataaacgtttattg
aatgaaattgaattacgaaaaattgcacggcaagaaggaagaagatattgcgatccatta
cttaaatatcaagctgagagaatgcctgaacaaataagactaaaagttggcggagtgacg
cctcaacaaatggctgtttatgaagaatttgcgaggaatattccaggattcttaccacta
tctgaacgagacacacaagctttgttaatgccaaaacctgttacagaacctactgtaact
gcatttgctgctaatccagcagttgcagtagcgacggcacaacaagttgctgcatatgca
gcagctgtgagtaacgatgaagttggagctatgttagaaaaacttgcagctgaagttgaa
gtattgcttgctgcaatgggtccagttacacctcctccacaacatgctgctcttcacagt
ctcttagattctattatcctaacacgaagatcaagagatgcaggcgctgctatgacatta
cttaaaaaagctgtagaaggtttattagatggccctaccattaccagcggtgtaatagat
tcagaaattatattgcgatatagagaacttcatctacgtattttaaaatgtttacaagat
ccacgtgcctatggcatgcaatggacaaacaaacacattactcggtgtttaactgagtgt
cgagaagagtttcgatacaacttcgaagctgtcgattatcttatcaggtctcatttaatt
agtcttccacagtatgatttagctttggctcaagctatagattctggaaattctatggcg
acagcatttgctatgcagttggtgcaactttatttaattgatgaaagacaaactacacat
gttgccgaatctgacctatttcacacaattgaaatacttgcccgaatagctcaccacaga
gcaccacctgaaggaattttactgtttagactgacaaatctgatagaatcattgcgccta
aatcatgatacaggagtattagcagacagagctcctgctggccctacggcgcatattcat
tctggaattctacaggtgagagctcgtgactttgacgatccacctggattgatggaaaag
acggaatatttgttacgcgaatggatctcaatgcatcataatccaacgcatgctcgtgat
cccacgaaagctttcggaatgtttgtccatcaaatgaacattcatggaatccttaaaaca
gacgatctcataacaagattctttaagttgagtactcagatgtgtgtcgattcgtgttat
cgtgctttagctgagacaaattctgtagaatgtattgttcgtgcgaaatgtttccattcg
ttggatgctttcgttcgtttgatcgcacttctggtaaaacattctggtgacagcacaaac
actcatacaaaaattaatttactgaacaaggttttgggaatcgttgctggtgtattacta
caggatcaggaaatgcgaggaactgattttcaacaattaccgtatcatagaattttcatc
atgctttttttggaactttgcacccctgaacctgtattggaagcaataaattatcaagta
ttaactgctttctgccatacgctacatatacttagaccagccaaagcttcaggattttgt
tacgcttggttggatatagttgcacacagagtctttattggacgtacgcttgcgattaca
ccacaacaaaaatgttggggcatgtatgcgcaacttttaattgatctctttaagtacctt
gcatcataccttcgaaacacggaacttgcaaagcctgttcatacattatacagaggaaca
gttagagtactattagtcttattacacgattttcctgaatttctttgtgaatatcactat
ggattttgtgatgtaattccacttaattgcacacagatgaaaaatattattttaagtgca
tatccaagaagtatgcggttacctgatccattcacgccgaatttaacagttaatctgcta
caacaagcaacacataccccccgaatattgacaaattttgcatctatgatacagccatta
agtttcaaaaaagaacttgattcgtatttaaaagcgcgagctccagttactttcctttct
gaattgcgtagtaatttacaagtgtctcaagacaccggttttcgctataatattccatta
atgaacgctctcgtactttatgttgggacacaagctatatcttttattcgcagtaaagga
catacgcctaacatgtctgctatcgcacattctgcacatatggatatatttcaaaacttg
gcagtggatcttgatacagaaggccgttatttattcataaatgcaattatgaatcagttg
cggtatcctaacacccatacgaattacttctgttgtacacttctgtacttgtttgttgaa
gctaatacgcaagcgatacaagaacaaattacaagagttattcttgaaagacttgttgta
aatagacctcacccatggggtcttcttgttacttttgttgaacttatcaaaaatccaaca
tacaaattctggacgcatgaatttattcactgtgcaccagaaattgaaaagttattcgat
tcaatagctcattcgtgtaggaacctaaaagatttagaatccattcgggaaccgaatatc
ccagagtga
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integrated database retrieval system
