Bombus vancouverensis nearcticus: 117155340
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Entry
117155340 CDS
T07628
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117155340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117155340
03009 Ribosome biogenesis [BR:
bvan03009
]
117155340
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117155340
Ribosome biogenesis [BR:
bvan03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117155340
Pre-60S particles
117155340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
Arm
HEAT_2
TPR_IMB1
TOR1L1_N
Cnd1
IBN_N
Vac14_Fab1_bd
HEAT_EF3_N
HEAT_MROH2B_C
TPR_IPO5
MMS19_C
PDS5
TPR_DNAAF5
HEAT_GCN1_C
Adaptin_N
Ltn1_1st
HEAT_DAAF5
HEAT_MROH2B_1st
HEAT_Maestro
VPS15-like_hel
INTS7_N
SCD
Dopey_N
TPR_TTI1_C
UNC45-central
RTP1_C1
DUF1475
Motif
Other DBs
NCBI-GeneID:
117155340
NCBI-ProteinID:
XP_033187114
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MLSWRDGGGNRGELPFICEVREGWLRSVVLLKNTMKMAWQPQEEGLRQILTLLKESQSPD
TATQRAVQEKLEELNKFPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVKAHFYKFLPE
VTNFIKQECLSAVGDSSPLIRATVGILITTIASKGELTRWPELLPALCQMLDSQDYNVCE
GAFGALQKICEDSAEILDSDALNRPLNVLIPKFLQFFRHSSPKIRSHATACVNQFIVNRT
QALMIHIDSFLENLFHLANDDDPEVRKNVCRALVMLLEVRMDRLIPHMHNIIEYMLMRTQ
DLDEGVALEACEFWLSLAEQPICKEALAPHLPRLVPVLVRGMKYSDIDIILLKGDVEEDE
MIPDREEDIRPRFPKSKTHHSHHGNMNKHSNENGGCDEEDTDAEDGCDDDTSLSDWNLRK
CSAAALDMLANVFREELLPVLVPILKETLFHQDWVIKESGILALGAIAEGCMSGMIPHLS
ELIPYLISCLSDKKALVRAITCWTLSRYAHWVCAQPHDTHLKPLMTELLKRVLDGNKRVQ
EAACSAFATLEEEACTELVPYLGFILETLVFAFGKYQHKNLLILYDAIGTLADSVGHHLN
KPDYINLLMPPLINKWNVLKDEDKDLFPLLECLSSIATALRSGFLPYCEPVYRRCVSLVE
QTLNQHIANTQSPEQFEAPDKDFMIVALDLLSGLAEGLDCHMERLVMNSNVMQLLYQCMQ
DVMPEVRQSSFALLGDLTKACFQHVLPCIPEFMPILGQNLNPEFISVCNNATWTIGEIAI
KLGSDTSAYIPLILTQLIDIINRPNTPKTLLENTAITIGRLGYVCPHDVAPMLQQFVRQW
CTSLRSIRDNEEKDSAFRGMCQMITVNPAGVVQDFIFFCDAVASWMTPREDLKDMFQKIL
HGFKNQVGVENWKRFSDQFPPQLNERLHNMYGV
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgtggcgtgatggtgggggcaaccgtggggagcttccgtttatctgtgaggtc
agagaaggctggctgcgttcagtggtgctgttgaaaaacacgatgaaaatggcgtggcaa
ccgcaagaggaaggacttcggcaaatcttgacgctcctcaaggagtctcaaagcccggat
acggctactcaacgagctgtacaagaaaaattggaagaattaaacaaatttccagacttc
aacaattaccttatttttgttttaacaaaactcacatcagaggatgaacctacgaggtct
ttaagtggactgattttgaaaaataacgttaaagctcatttttataagtttttaccagag
gttacaaatttcatcaaacaagaatgtttatctgcagttggagattcatcacctctgatt
cgtgcaactgttggtattttaataactaccattgcatccaaaggtgaattaactagatgg
ccggaattgttacctgcactttgtcaaatgttagactcacaagactataatgtttgtgag
ggtgcatttggtgctcttcaaaagatctgtgaagattctgcagaaattttagattctgat
gcacttaatcgaccattaaatgttttaatcccaaagttcctgcaattttttagacattca
agccctaaaattagatcacatgctactgcctgtgttaatcagtttattgttaatcgtaca
caggctttgatgattcatatagatagcttcctggaaaatctcttccatttagctaatgat
gatgatccagaagtcagaaagaacgtatgcagggctctggttatgttgcttgaagttcga
atggatagattaataccacatatgcataacataatagaatatatgttaatgaggacgcaa
gatcttgatgagggagtcgctttagaagcttgtgaattttggctttcattagctgagcaa
ccaatatgtaaagaagcacttgcaccacatttacctcgtttagtacctgtattggtaagg
ggtatgaaatactcagacattgatataatacttctaaagggggatgtggaagaagatgaa
atgatcccagatagagaagaagatatcagaccaagatttcctaagtcaaaaacgcaccat
tcacatcatggtaatatgaacaagcactcaaacgaaaacggaggttgtgatgaagaagac
acagatgctgaagatggatgtgatgacgatacgtcacttagtgactggaatttaagaaaa
tgttctgctgctgctttagatatgttggcaaacgtatttagagaagaattattaccagtt
ctagtaccaattttgaaagaaacgcttttccatcaagattgggtaatcaaagagtctgga
atattagcactgggagctatagcagaaggttgtatgagtggaatgattccacatttatca
gaattaattccatatttaattagttgcttaagcgacaaaaaagcactagtacgcgctatt
acttgctggacattaagtcgttacgcacattgggtttgtgcgcaaccacacgatacacat
ttgaaacctttaatgactgaattactgaaacgagtacttgatggcaataaacgtgtccag
gaagcagcatgttctgcttttgcaacgttagaagaggaagcatgtacagaactagtccct
tatcttggatttattcttgaaacgcttgtttttgcttttggcaaatatcaacataaaaat
cttttaatattgtacgatgcaattggtacacttgctgattcagtaggacatcatcttaat
aaaccagattacattaaccttcttatgccaccacttattaataagtggaatgtgttaaaa
gatgaagacaaagaccttttcccattattagaatgcctttcttcaattgcgactgcttta
cgatctggtttccttccttattgcgaacccgtgtataggcggtgtgtatccctcgtagag
cagacgctaaatcaacacatagcaaatacacagagtccagaacaatttgaggcccctgat
aaagattttatgattgttgcattagaccttcttagtggcttagcagaagggttggattgt
catatggaacgcttagtaatgaacagtaatgtaatgcaactgctgtatcagtgtatgcaa
gatgttatgcctgaagttagacaaagcagttttgccttattaggggaccttacaaaggcc
tgtttccaacatgttctaccgtgcataccggaatttatgcctatacttggacagaattta
aatcctgagtttatatctgtatgtaataatgcaacatggactatcggtgaaatagctata
aaactcggttctgatacaagtgcatatattccattaattttgacccagcttatcgatata
atcaacagaccgaatacgccgaaaacgctgttagaaaatacagccataacgatcggtcgc
ctaggttatgtgtgtccccacgacgtcgcccccatgttacagcagtttgtccgacagtgg
tgtacctctttgagaagcataagagataatgaagaaaaggattcggcatttagaggtatg
tgccagatgattacagtaaatcctgcaggagttgtacaagatttcatctttttctgtgat
gctgttgcatcttggatgacgcctagagaagatcttaaggacatgtttcagaagatatta
catgggttcaaaaatcaagttggtgtggaaaattggaaacgattttcagatcaattccca
ccacaacttaatgaacgactccataatatgtatggcgtttga
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