Bombus vancouverensis nearcticus: 117156388
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Entry
117156388 CDS
T07628
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117156388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117156388
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117156388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_16
TPR_14
TPR_2
TPR_8
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_17
TPR_11
TPR_6
TPR_10
ARM_TT21_C
TPR_9
ANAPC3
TPR_21
BTAD
ChAPs
TPR_15
HAT_Syf1_CNRKL1_C
DUF7017
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
117156388
NCBI-ProteinID:
XP_033189254
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MSNEIKVALKAARDTFREKKYIDVIKKCNKILMRDENNYSALMLLAAAMKEIDEYKPQVP
LILQKGTKIQADNPLAWYGLVSYYEKNLDNNECYNQLLLAYCKLLEIESDSKFTNIMSRI
SKLFTQLKDVTTITQCIEHLIELRKNLDDNKIKVIDKTLGWLLLDNFYNLNKYQNLLESV
FKSTINDLDATDQQKFYTEYLKILYDKDELIDLVKEAINMHQRFPQDTLPLEYICLAYSE
RNILDENFTDLDITQFYEGSLKLNKECEAAKIAKAFDLAKSGNLIIARDILKDILVSTPR
SVYGWMALSQISMKLYCWEDAEVAAKRVLDMKKSKIKNKLLYKMKETLVESTSLTNDKSK
WETALRMCEQIHPSARLDLIRARLSILLHQPDVEILLNNLESKDETRTHTNILRALYLKQ
NKQYDEAVNILDSAVRKPGLAQTSQAWLLLGTIYWEMAEYNYSLMAFLNGIKADRFNWKC
LVYLGQYYRDYGNDMERSRRCYQTALQINPNSEEAGIGLSTAYRLLKNQDANIKLLQMLT
AQDSGPRWAWLQLGLQYLDQGNAEQAIKAFQHVIRADPSDSHCWESLADAYFIRGAHTSA
LKSYQRVLELCPKLLYPMIQLAYIKLIIGQYNEAKKDFEQILINKSCYIPALKGLAETCL
ALAKDYTAKQLLGRVNDYLQQAMDSLTVAIKERKDISCLWKLLGDVCYRVAMLPDKYSHL
KASSILIKYENDEHIVLLKRIDMFSLSARCYCCALSLSPESVFLWYDLALCYLMQLQHDP
SINHKNHASKCLAAAKHAVKLCPSTWKHWNLLGIICMSPYVRNYALAQHAFVMAIDKELN
NAIVWSNLGTLYLYIGSLYKANEAYSRAQRADPSYINSWIGQALIAEIMDRKETVDLFRH
ARQLGYHSQAAIGYTHWVLVMILNPTTKHDILYMDTTQSMHAISSAADVMTWYVENHPND
CHARNAYGLLLERQRLYKSAAEQFAVAVCNSTKNEKDLVSINLARVLIRLKRYNEAIKLC
QGVENINYNSQCNLALALFKAKLYEEAYNTYEKTLQSFANTEAQKSFTLCAMAAIAYSFH
RVNDAKTLLFQCIQIHPPVIIGLLAAASLGILHGDINLVSLVLKELEFSVPNPEYGHHIL
SLYAYYYVMGNDVQRAITILSKEIFRYPGNVKYWTILLRILLDTDLQLFSRCAQKVLFLN
RNIITENHAHVACALSYSCFMLNMGPASIRSMQKLLFTYPASIESWAMFITGFLSRRTLK
KCKMNAEWFVTFINNIQQSYQPTYFMAKWLNDTKTKLKQLN
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgaaataaaagtagctcttaaagcggctcgtgatacatttagagaaaagaag
tatatagatgtgattaagaaatgtaacaagatattaatgagagatgaaaataattatagc
gcacttatgttattggcggctgcaatgaaagaaattgatgagtataaaccacaagtacca
ttaattctccaaaaaggtacaaaaatccaagcagacaatccattagcttggtacggttta
gtatcttactatgaaaaaaacttggacaataatgaatgttataaccaactattattagct
tactgcaagcttttggaaatagaaagtgactctaagtttacaaatattatgagtagaatc
tcaaaactttttacgcaacttaaggatgttacgactataactcaatgtattgaacattta
attgaattacggaagaatttggatgataacaaaattaaggtcatcgataaaacgcttgga
tggctgctattagataatttttacaatctaaataaatatcaaaatttattagaaagtgtt
tttaaatctacaattaatgatcttgatgcaactgaccaacaaaaattttatacagaatat
ttaaaaattttatatgacaaagatgaattaattgatttggtaaaagaagctatcaatatg
catcagcgattccctcaagatacattaccgttagaatatatatgtcttgcttactcggaa
cgaaatatcttggatgaaaattttactgacctcgatataacacaattttatgaaggtagc
ttaaaattgaacaaagagtgtgaagcagctaaaattgctaaagcatttgatttggcgaaa
tcgggcaatttgattatagcgcgagatatattgaaagatatacttgtatcgacgccgcgc
tcagtatatggttggatggcattgagtcaaataagtatgaagctttactgttgggaagat
gcagaagttgctgccaagcgagtattagatatgaagaaatctaaaataaaaaataaatta
ttatataaaatgaaagagacattagttgaatcaacgagtttaactaatgacaaatctaaa
tgggaaacagcattacgaatgtgtgaacaaatacatccttcagcgcgtttggatttgatt
cgtgcacgtcttagcatattgttacatcagccagatgtagagattctgctgaacaatttg
gaatcaaaagatgaaaccagaacacataccaatattcttcgagcgttatatttaaaacaa
aataaacaatacgacgaagctgtgaatatacttgattcagccgtccgaaagccaggcttg
gctcaaacttcccaagcgtggttacttcttggtacaatctattgggaaatggcagagtat
aattacagtttgatggcttttttgaatggaataaaagccgatcgttttaattggaaatgt
ctagtttacttgggacagtactatcgtgactatggtaatgacatggaacgttctaggagg
tgttaccaaaccgcgttacaaattaatccaaattctgaagaagctggtattgggttaagt
acggcgtatagacttcttaaaaatcaagatgcaaatataaaattgttacaaatgttaact
gcgcaagatagcggtcctagatgggcgtggttacaactcggtttgcaataccttgatcaa
ggaaatgcggagcaggctattaaagcgtttcaacatgttattagagctgaccccagtgat
agccactgttgggaatcgctagcggatgcgtattttataagaggtgcccacacatcagca
ttaaaatcttatcagcgagtattagagttatgcccaaaattattatatccaatgatacaa
ttagcatatataaaattgattattggacaatataacgaagcaaagaaagactttgaacaa
atattgataaataaatcatgttatatacctgctttaaaaggattggctgaaacctgtttg
gctttagcaaaagactatactgctaaacaacttttgggtcgtgtgaatgactatttgcaa
caagcaatggatagtttaactgtagctattaaagagcgtaaggatatatcttgtctctgg
aagttacttggcgatgtgtgttacagagttgcaatgttaccagacaaatacagtcattta
aaagcatcatctattctaataaaatatgagaatgacgaacatattgtattgcttaaacga
atagatatgttctcattatctgcaagatgttattgttgtgcattatctctttctccggaa
tcagtttttctgtggtatgatttagctttatgctatttaatgcaattacagcatgatcca
tcaatcaatcataaaaatcatgctagtaagtgtctagctgctgcaaaacatgctgttaaa
ctatgtccttcaacatggaaacattggaatcttctgggtattatttgtatgtcaccgtac
gtaaggaactatgcattggcacagcatgcttttgtaatggcgattgataaggaattaaat
aatgctatagtatggtctaatttgggaactttatatctatatataggaagtttgtataaa
gcaaacgaggcttattctcgagctcagcgtgcagatccgtcatatataaatagttggata
gggcaagctttaattgcagaaataatggatcgaaaagaaacagtagatctatttagacat
gcaagacaattaggatatcatagtcaagctgccataggatacactcattgggtacttgtt
atgattttaaatcctactaccaaacatgacattttatatatggatacaacacaaagtatg
catgcaatatcttctgctgctgatgttatgacgtggtatgtagagaatcatccaaatgat
tgtcacgctcgaaatgcatatggattattattagagagacagagactttataagtcagct
gcagaacaatttgccgtagctgtatgtaatagtaccaaaaacgaaaaagaccttgtttct
ataaatttagcacgtgtactaatacgactgaaaagatataacgaagcaataaaattatgt
caaggagttgaaaatatcaactataattctcaatgcaatctcgcgttagcgttattcaaa
gctaagctatatgaagaggcgtataatacatatgaaaaaactctgcaatctttcgcgaat
actgaagcacagaaatcatttacattgtgtgcgatggctgcgatagcatattctttccac
agagtaaatgatgcaaaaactttacttttccaatgcatacaaatacaccctccagttata
ataggtcttttagcggccgcatcgttaggaatattacatggcgatatcaatttagtttca
ttggtactaaaagaattggagttctctgtacctaatcctgaatatggtcatcatattcta
agcttatatgcatattattatgtgatgggaaatgatgttcaacgagccattactattctt
tctaaagaaatctttagatatcctggtaatgtaaaatattggactatattactcaggata
ttattagatactgacttacaactgtttagtagatgcgcacaaaaagtattgtttcttaat
agaaatattattactgaaaaccatgcacatgttgcatgtgctttatcctatagctgtttc
atgctaaatatgggaccagcaagtattagatctatgcaaaagcttctatttacttatcct
gctagcattgaaagttgggcaatgttcattacaggatttttatcaaggcgtacactgaaa
aaatgtaaaatgaacgccgagtggttcgtaacatttataaataacatacaacagtcatat
cagcccacatatttcatggcaaaatggttaaatgacactaaaacaaaattgaaacagctc
aattaa
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