Bombus vancouverensis nearcticus: 117163912
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Entry
117163912 CDS
T07628
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan04512
ECM-receptor interaction
bvan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117163912
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117163912
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bvan00535
]
117163912
Proteoglycans [BR:
bvan00535
]
Extracellular matrix (ECM) proteoglycans
Others
117163912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
117163912
NCBI-ProteinID:
XP_033202516
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MYFSIWIFVLVQFTRTKYTSGEETILNSPRGPCEGYKQGEDDLQTFDFISKLKLDLLEAH
YTGVTRVRGSNRMQIAYRLEKDTDITQPTKVILPNGLPEEFSTACTFRARKLPKYTWHII
RIVDMENEPQFLIAMNPKIQTLDLSVRNQTGELETVSFPADRIFDKNWHKINVGVFKDRL
VVYIDCEYIDTQDLDPRGTIKVDGEISISKISHSKDVTVPIDIQWMVLNCDPTRPERETC
EELPKSLSSPLLPQRRPGCEIICPQGPPGINGTNGLPGLTGLPGPPGPIGEPGLPGQPGL
RGSPGEQGKVGPQGFTGARGFPGNPGPKGSIGPIGLPGAKGENGERGDMGFPGLKGDQGL
PGPQGYPGPPGPPGKISDYRDAIPKFVGPPGSPGYPGQKGSKGEQGERGDEGKQGEKGEP
GERGSPGQDGSPGSEGRSGLPGFPGPKGEIGFPGVPGPQGLQGLRGEAGAQGSPGIQGQK
GEAGEPGRDGLPGSMVGSILPGPPGPEGPPGSPGEDGLPGVKGEPGPIGPPGLPGLQGKD
GAPGSLGPPGLQGSPGLPGEPGAPGPRGIEGAIGKPGLPGLDGRSAEKGDRGQQGEQGPV
GPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLSTNNVLETIGS
PGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGMPGKDGAPGLQGPPGIRGQTGMPGV
QGPPGRSIIESEIREICTSVLREQMTEMAAQMQGPPGPPGRGRPGRPGSPGPQGRPERLK
TLTEGLRGPPGLPGLARQGRPGRIGTQGIPGDPGLPGLPGERGFVGLPGPQGAIGPQGSP
GERGEKGDKGQEGVGVEGPMGPQGPPGPPGNDGAGLPGRQGERGEPGRPGIPGMRGPPGL
HGLPGFCEFCNYQSANYLQYPRGDKKGP
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtacttctcaatatggatattcgtgcttgtgcaattcacacgtacgaaatatacatct
ggcgaggaaacaatcttaaattctcctcgtggaccatgcgagggatacaaacagggcgag
gacgatcttcaaacattcgacttcatcagcaagttgaaactagatcttttggaggcacat
tacactggcgtgacgcgagtcagaggtagcaatcgtatgcaaatcgcctacagattggaa
aaagatacagacatcactcaaccaaccaaagttatactcccaaacggattgccagaggaa
ttcagcacggcttgcacatttagggccagaaaactgccaaagtatacttggcacattatc
agaatcgtcgacatggaaaacgagccccagtttttaatcgcaatgaacccaaaaattcag
actttggatttatccgtgaggaaccagacaggggaactggaaacggtgtcgtttccggcc
gatcgtatcttcgacaaaaattggcacaaaattaatgttggagtcttcaaggataggctg
gtggtgtatatagattgcgaatacatcgacacacaagacttggatccacgaggaacaatc
aaagtggatggcgagatatcgatatcgaaaatatcacacagcaaagatgttactgtaccg
atcgatattcagtggatggttttaaattgcgatcctacgaggccagagagagagacctgt
gaggaactgccgaagagccttagcagccctttattacctcagagaagacctggctgcgaa
attatctgtccacagggaccaccgggaattaatggcactaatggtttacccggtttaact
ggattgcccggaccacctggccctatcggagaacccggcttacctggacagccgggttta
cgcgggtcacctggagagcaaggcaaagtaggaccacaaggattcactggtgcacgtgga
tttcccggaaatccaggtcctaaaggatctattgggccaattggactacctggagcaaaa
ggagaaaatggcgaaagaggggacatgggatttccagggttgaaaggagatcaaggcctc
ccgggaccacaaggttatccaggtcctccaggtccaccaggaaagatcagtgactatcgc
gatgctataccaaaatttgtaggcccaccagggtctccgggatatccaggtcaaaaaggt
tcgaagggcgaacaaggagaacgcggcgacgaagggaaacaaggtgaaaaaggtgagcca
ggagaacgaggttccccagggcaagacgggtctcctggttcagaaggaaggtcaggactt
cctggcttccctggacctaaaggagaaataggatttccgggagtaccaggtcctcaggga
ttgcaaggtcttcgtggtgaagctggtgcgcaaggatcacccggaattcagggccaaaaa
ggagaagctggagaaccaggccgtgatggtttgccaggttctatggtcggttccattcta
ccaggaccacctggtcctgaaggtccccctggttcaccaggagaagatggtttgccagga
gtgaaaggagaacctggtcctattggtccaccgggtcttccaggtttgcaaggaaaggat
ggcgctcctggttctctaggacctccaggattacagggttcacctggcttacctggagaa
ccaggtgccccaggccctcgaggaatcgaaggtgctattggtaaaccaggactaccagga
ctcgatggacgatctgcagaaaaaggcgacagaggtcaacaaggagaacaaggtcctgtt
gggccacgcggtttacctgggagtgtcggtgcaccgggtttacctggagtcgctggtatt
ccaggattagaggggcggccaggtccgccaggtgccccaggtcctccaggaccagcagga
ccaccaggaacaatttcagacatgttaagtacaaataacgtattggaaactatcggcagt
ccaggagttagtggaccaagaggtgcgtcaggtgctccaggattaccaggtgagagaggc
cctcctggagaacgaggtccagagggtcaaatgggactaccgggaatgccaggaaaagat
ggggctccaggacttcaaggaccgccagggattagagggcagacaggaatgccaggagtt
caaggaccgccaggccgaagtatcattgagtcagaaattcgagaaatatgtaccagtgtg
ttacgagaacagatgactgagatggcagcacagatgcaaggtccacctggtccacctggt
cgaggccgtccaggtcgtcctggatcacctggtccacaaggtcgcccagagaggctgaaa
acactaacagaaggtctacgagggccacccgggttgccggggctggcccgacagggtcgt
cccggtcgaattggaacccagggcatcccaggtgatccaggtctcccaggtttacccgga
gagcgtggatttgtcggattaccaggaccacaaggcgccataggtcctcaaggttcacct
ggtgaacggggtgagaagggtgataaaggtcaggaaggcgttggcgtagaaggtccaatg
ggtccgcaaggaccgcctggaccacctggcaatgatggcgctggattgcctggaaggcaa
ggagaacggggggaaccaggcaggccaggcattcctgggatgagggggccacctggactt
cacggattacccggattttgcgagttctgtaattatcaaagcgccaattacttacagtat
cctcgcggcgataagaaagggccctaa
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