Beta vulgaris (sugar beet): 104905333
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Entry
104905333 CDS
T03548
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104905333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104905333
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104905333
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104905333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
104905333
NCBI-ProteinID:
XP_010692136
LinkDB
All DBs
Position
1
Genome browser
AA seq
2390 aa
AA seq
DB search
MQEFSSTVSSHIRFLLQSLNGSNSDAVFRELCQFTEHGLEGSLLILQSCLDYMNLCGTDV
KNVHLHPVVSSVFRFILDKPNFSTVLCQCLKHVTIRDGFLDDLSNALGLSLPEKIATGLA
FSESENPDARLIGTNFCMTQIEGLFGNPSTIEPTEQIQNIFMFLHRCEGLSKHVDTFTQM
LSLMQLKEGVPLVLSPLLPDDLNETKFISRSMDLFYDSNEDDFDAIVAEMEKEISMADVM
KELGYGCTMSASKCKEILSLFMPLTEATIARILGIVVRTHAGLEDNTTTFSSFLSAIGSN
PLADLPYLSSWDVNILVETIQLLAPETNWVEVMENLDHEGFHIPNENAFAFFMTIYKHAC
QDSFPLHAICGSVWKNSEGQLSFLKYAVSASPDIFTFAHSIKQLGSVDQVSGLKTQSGQS
NHAWFCLDLLDVICQLAERGHAATIQSMLEYPLKHCPEVLLLGVAQIHTTYNLLQHEVSS
TVLPMIIANASRKGVILHLWHINHQLVLRGFADILASGSDSVHRILDICQETKILNHVLE
RMPFSFAIKLAAFASQKELLDLERWLSDNLMTSKDTFFKECFNYIKEIQSQAVSEENANR
LHQTASSANLGSQSALVILKVLQANARTMTSKGLCDEIEKMHVSVMNGSLIQQNDGVNDT
SSSNTYSDDIEAEANSYFQSMFAQQLTIDEMVQMLGCFKESSEKREQSIFECMISNLFEE
YRFFPKYPERQLGIAALLFGSIIKHQLVTHLPLGIALRCVLDALRKPADSKMFAFGTKAL
EQFVNRLDEWPQYCNHILQISHLRGTQPELVAYIEGVLTRKSHGGNGPVDQLNISSLGTT
GSEIIGSTASQLGQTLSSPLPTLPRPPMLVDDGTKTSSSLNSFTKPFVAASAQSTATSVA
ETVSVPKIPSPLTAPGMLSSSQGIARSRGVTNARFGSALNIETLLAAAERRDPPIEPSSE
AQDKISFIVNNISTTNMEAKAKEFSEILKEECYPWFAQYMVMKRASIELNFQEMYLKFLE
KVNLKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGRLTIGRNQVLRARD
IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEIYAMPNLK
MNLKFDIEVLFKNLGVQIKEVTPTSLLRDRVRVVEGNPDFSNKDFVAPQPPVSSEDQVVI
PEPMEPPKSQLPVPISPYVVPPEDDKVGSMGFSDQLPSAQGLLQSTSSQSPYNMTQLPPS
ITSLGAHVVVNSKLNSMGLHVHFQRVLPLAMDRAIKEIVPGIVQRSVSIANQTTKELVIK
DYALESDESRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNMIQGVNIGSEVLEQY
VQLVTNDNLDLGCAIIEQAATEKAVQTIDGDISQQLSLRRKHRESLGSSIYDASIYAQGP
MGVLPETLRPTPGRLSVSQQRVYEDFVRLPWQNQQSTQSANPALPVHSPSPAGGSFPRAF
SASSGQPSANVYSSGLGNTGFGVGSQSIDLVSEEMESSSIQMLSTSALSQIRTSDSVGSQ
RSEIDSAPVSSSAGPLLDPQSAESTASIKESGITSQPLPLGSAPIGTGLSEPLLTTGDAL
DKYQIVESKLETALANDVRDGEIQSIVLEVPQIILRCVSRDEAAVAVAQKVYKALYENGG
SSLHITAHLAILSAIRDVCKLVVKELTSWVIYSDEERKFDKDITVSLIRRDLLNLAEYNI
HMAKLLDGGRNKLATEFAVSLLQTLVNEEPKVISELQNLVEALPKQLAVRPGSPELLQQL
VETVKNPAATVGGLTSPNTGKDDKNRQARDKKVSQSLASRGGYNNLEVMEPDASNFQKQV
SPLFAEWYQICEVSSGFDNACMRFVLQLHQSGLLRGDDITDRFFRVLLEISVSHFGEVVQ
QSPKQPPHLIQTSFLAIDSYAKLVYSILKHCPVDQGTSKLFLLPKILVVTVRSIQKDADE
KKEEFNPRPYYRLFINWLLDFGSLDPVHDGINFQVLSAFANAFHALQPLKVPAFSFAWLE
LVSHRTFMPKLLAGNSQKGWPLLHRLLVDLFQFMEPFLRNAEMGELIRFLYKGTLRVLLV
LLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLEEMSQA
PRILSDVDAVLKAKQMKADVDEYLRTRQQSSPFLSELKQRFLLPPSEVTHAGTCYNVPLI
NSLVLYVGIQAVQLLQARNRSQSQPVSSDPLAIKAALDIFQTLMRDLDTEGRYLFLNAIA
NQLRYPNTQTHYFSVVLLYLFTDAHQEIAQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPGYNFWNRSFTRCAPEIEKLFESVSRSCGGQKPVNESMVGSGGLSESAH
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattctcatcgacagtttccagccatatccgctttcttcttcagagcttgaat
ggatccaattctgacgctgtatttcgagaactatgtcagtttacggaacatgggttggaa
ggaagcttattgatcctgcagagctgcttggattatatgaatttatgtgggacagatgta
aagaatgtccatctgcacccagttgtatcttcagtatttagattcattttggataaacca
aatttcagtactgttctctgtcagtgtcttaaacatgtcacaatcagagatggattcctt
gatgatttatcaaatgcactagggctctcacttcctgaaaaaattgccactggtcttgca
ttctcagagtctgaaaaccctgatgccagactgattgggacaaacttctgcatgactcag
attgaggggttgtttggcaatcccagcaccattgaacctactgagcaaatccagaatatc
tttatgttccttcaccgatgtgagggtctctcaaagcatgttgatacctttacgcagatg
ttgagtttgatgcagctgaaagagggggtcccacttgttttgtctcccctgctcccagat
gatctgaatgagacgaaatttatcagcaggagcatggatttgttctatgattctaatgag
gacgactttgatgctattgttgctgaaatggagaaggagatcagtatggcagatgtcatg
aaagaattgggatatggatgcacgatgagtgcctcaaaatgcaaggaaatattgtctctt
ttcatgccacttactgaagcaaccattgctaggattctgggcattgttgtccgtactcat
gctggtcttgaggacaatacaactacattttcgtcattcctatctgcaattggtagcaac
cctttggctgatctcccatacctcagttcttgggatgttaatattcttgttgagacaatt
caattgcttgcacctgaaaccaattgggtagaagtcatggagaatctggaccatgaggga
ttccacatcccaaacgaaaacgccttcgcattttttatgaccatttacaagcatgcctgt
caggactcctttcctctccatgctatatgcgggtcagtttggaagaattctgaggggcaa
ctctcctttctcaagtatgcagtatctgcatcacctgatatatttacctttgcacattcg
attaagcaactgggttctgttgatcaagtctctggtttgaaaactcaatctggacaatca
aatcatgcatggttttgtcttgatcttttggatgtaatatgccagttggctgagaggggc
catgctgctactattcagtccatgcttgagtatcctcttaagcactgccctgaagtactg
cttctcggggtagcacaaatccatacaacatataatcttcttcagcatgaagtttcttct
actgttctaccaatgataattgctaatgctagcagaaaaggagtaatccttcacctctgg
cacatcaaccatcagttggtattgcgtggatttgctgatattctagctagtggttcagac
agcgttcacaggattttagatatatgccaggaaacaaagattctcaaccatgtcttggag
cggatgcctttctcttttgctatcaaactggctgcatttgcttctcaaaaggagctttta
gatcttgagagatggttaagtgataatttaatgacaagtaaagacactttctttaaggaa
tgctttaactatattaaagagatacagagtcaagctgtatcagaagaaaatgctaacagg
ctgcatcaaactgcttcatcggctaatcttggttcgcagagtgctcttgttatcttgaag
gtccttcaagccaatgctcgcacaatgacctccaaaggtctttgtgatgaaatcgagaaa
atgcatgtatctgtgatgaatggcagtttgattcagcagaatgatggggtgaatgataca
tcctcctcaaatacatattctgatgatattgaggcagaggcaaattcctattttcagagc
atgtttgcacaacagcttactattgatgagatggtccaaatgcttgggtgttttaaagaa
tcctctgagaaaagggaacaatccatttttgagtgcatgatctccaatttatttgaagag
tacaggttctttcctaaataccctgagagacagcttggaattgctgctctgttatttggc
tctatcatcaagcatcagctagttactcatctgccgcttggaattgcacttcgttgtgtt
ttggacgcattacgaaagcctgctgactcaaagatgtttgcgtttggtaccaaggctttg
gaacagtttgtcaatcgtctggatgagtggccccaatattgcaatcatatcttgcagata
tctcaccttcgtggtactcagcctgaactcgttgcatatatcgaaggggttcttacccgt
aagtctcatggtggaaacggtcctgttgaccaacttaatatctcatctcttggaacaacg
ggcagtgagataattggatctactgcatcacaattggggcaaacgctttcttctccacta
ccgaccctaccaaggcccccaatgctggttgatgatggaactaagacttcttcaagtctg
aatagcttcacaaagccatttgtagctgcttctgctcaatctactgctacatctgtagca
gaaacagttagtgttccaaagattccgagtccactgactgcacctggtatgctgtcttca
tctcaagggattgctcgtagccgaggagttaccaatgccaggtttggttcggcgttgaac
atagagacactccttgctgcagcagaacgaagagatcctccaatagagccatcgtctgag
gcccaggataaaatttcattcatcgtcaacaacatctctactactaacatggaagctaaa
gccaaagaattttcagagattctaaaggaggaatgctatccttggtttgcacaatatatg
gtgatgaaaagagctagcattgagcttaattttcaagagatgtacctaaagttcctggaa
aaagtaaatttaaaagcgctgaataaggaaattgttcaggcaacatatgagaattgcaag
gttcttttaggttctgagctcataaaatcaagttctgaagagcgctctttgctaaagaac
ttgggaagctggcttgggagacttacaattggcagaaatcaagttcttagggctcgtgat
attgatcccaaatctttgattatagaggcctatgagaaaggattgatgattgctgttatt
ccttttacttccaagatattggaaccatgtcaaagcagtttagcttatcaacctccaaat
ccttggacaatggggattcttgctttgcttgctgaaatttacgcaatgccaaacttaaag
atgaatcttaaatttgacattgaggtgctgtttaaaaaccttggagttcagataaaagaa
gtgacgcccacttctcttttgagagatcgtgtgcgggtagttgaaggaaatcctgatttt
tcaaacaaagattttgtagcaccacaaccaccagtttcttctgaagatcaagtggtaata
cctgagcccatggagcctcctaaatcccagcttcctgttccaatttctccgtatgttgtt
cctcccgaggatgataaagtgggcagtatgggattttctgatcagcttccttctgctcaa
ggattgctccaatctactagttctcaatcaccgtacaatatgactcagttacctccttca
attactagtcttggagctcatgtcgttgtgaattcgaagctcaatagtatgggcctacac
gtgcactttcaaagggtgcttccacttgctatggatagagctatcaaagaaattgtgcct
ggtatagtgcagcgtagtgtttccattgcaaatcaaacaactaaggagcttgtaatcaag
gattatgccttggagtcggatgagagccgcatatacaatgctgcacatttgatggttgct
agtcttgctggaagcctagctcatgtgacttgcaaggaacctctgcgaggctcaatatct
agccagctgcgtaatatgattcagggagtgaatatcggaagtgaagttttagaacagtat
gtgcagcttgtgaccaatgataaccttgacttgggctgtgccataattgaacaagcagca
acagagaaggctgtacaaactattgatggggacatctcgcaacagctgtcattaagaagg
aagcatagagaaagtcttggttcctcaatatacgatgctagcatatatgcacaaggtcca
atgggtgtcctaccagaaactcttcgtcctacccctggacgcttgtctgtttcccagcaa
cgtgtttatgaggattttgtgcggcttccgtggcaaaaccaacagtcaactcaaagtgct
aaccctgcacttcctgttcattctccttctcctgctggtgggagcttcccacgtgcattt
agtgcatcttcaggacaaccaagtgcgaatgtttactcctctggactagggaatactggg
tttggtgtgggttctcagtccattgatctggtttcggaggagatggaatcatcatcaatt
cagatgctaagcacttctgccctaagccagattagaacttctgatagtgtgggttctcag
cgctctgagattgattcggcacctgtttcttcttctgctgggccacttctggatccacaa
tcagctgaatccactgcaagtattaaggaatctggaataacctctcagccacttcctctg
ggatctgcacctataggaactggtctttcagagcctttattgacaactggagatgcgctg
gacaaataccagatagttgaatcgaagctggaaacagcactagctaatgatgtcagagac
ggggagattcagtctattgtcctggaagttccacagatcatactgagatgcgtcagtcga
gatgaagctgctgtggctgttgcacaaaaggtttacaaagctttgtatgagaacggaggc
agtagtttgcacattactgctcatcttgcaattttatctgctatccgtgatgtgtgcaag
cttgtggtgaaagagcttactagctgggtgatttactcagatgaggagcgtaagtttgat
aaggacattactgttagccttataagaagagacttgctgaacttggctgaatataatatt
catatggcaaagcttcttgatggaggaaggaacaaacttgcgacagaatttgctgtttcc
cttcttcaaacattggtgaatgaggaacctaaggttatttcagaactgcagaatttagtt
gaagctctaccaaagcagcttgctgtgaggcctgggtctcctgagttgctgcagcaacta
gttgaaactgtgaagaatccggctgctactgttggtggccttaccagtcctaatactgga
aaagatgataagaacagacaggctagagacaaaaaggtttctcaatctttggcaagtagg
ggcggctacaacaatttagaggtcatggagcccgatgcctctaatttccagaagcaggtt
tctccactttttgcagaatggtaccagatatgtgaagtttcttctggttttgataatgca
tgcatgagattcgttctacagctacatcaaagtggtttacttagaggggatgatataaca
gaccgctttttccgggttcttttggaaatatctgtgtcacattttggtgaagtggtgcaa
caatcacctaaacaaccacctcacctaatccagacctccttccttgccattgatagctat
gctaaactagtatattcaatcttaaagcattgcccagtggatcagggaactagcaaactg
tttctcttacccaagatattagtggtaactgtcagatcgattcaaaaagatgcggatgaa
aagaaagaagaatttaatcccaggccatattataggctctttataaattggttgttagac
tttggttcattagaccctgtgcacgatggtattaatttccaggttttgtcagcttttgca
aatgcattccatgccttgcagccccttaaagtacctgctttcagctttgcgtggcttgag
cttgttagtcacagaactttcatgcctaaattgcttgctgggaactctcagaaaggatgg
cccttgcttcaccgtttgttggtggatttgttccagttcatggagcctttcttgaggaat
gctgaaatgggagaattgatacgctttctgtacaaaggaactctgagagtgctgcttgtg
ctgctgcatgattttccagaattcctgtgcgactatcatttcagcttttgtgatgttatt
ccccctagctgcatacagatgcgaaatattatcctcagtgcttttcctcgcaacatgaga
cttccagatccttcaactccaaatttgaagattgatttgctggaagagatgagccaagca
cctcgtatattgtccgatgtggatgcagttctgaaggcaaagcaaatgaaagcagatgtt
gatgagtatctcaggacaaggcaacaatcgtctccatttctcagtgaactgaagcagaga
tttctacttccacctagtgaggtcacacatgctgggacctgttataatgtacctctgatc
aattcacttgtgctgtatgttggaattcaggcagttcagcttcttcaggcacgaaatcgg
tcccaatctcaaccagtcagttctgatccgttggcaatcaaagcagcgttagatattttt
cagactttgatgagggatttagatacagagggccgctatctgttcctaaatgcgattgct
aatcagttgcgttatccaaatactcaaacacattacttttccgtcgtccttctctactta
ttcactgatgcacaccaggaaattgctcaggagcaaattaccagagtattgttagaaagg
ctaatcgtaaataggccacatccgtggggtctgctgattacatttatcgaattaatcaag
aaccctggatacaatttctggaaccgttccttcactaggtgtgcacctgaaattgaaaaa
ctgtttgagtctgtttcgagatcatgtgggggccaaaagcctgttaatgaaagcatggtt
ggctcaggaggtttgtccgaaagcgcccattga
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integrated database retrieval system
