Heyndrickxia vini: I5776_00635
Help
Entry
I5776_00635 CDS
T07201
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bvj
Heyndrickxia vini
Pathway
bvj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bvj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I5776_00635 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvj03021
]
I5776_00635 (rpoB)
03400 DNA repair and recombination proteins [BR:
bvj03400
]
I5776_00635 (rpoB)
Enzymes [BR:
bvj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I5776_00635 (rpoB)
Transcription machinery [BR:
bvj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I5776_00635 (rpoB)
DNA repair and recombination proteins [BR:
bvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I5776_00635 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QQZ09541
UniProt:
A0ABX7E1E2
LinkDB
All DBs
Position
118019..121576
Genome browser
AA seq
1185 aa
AA seq
DB search
MTGQLVQYGRHRQRRSFARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFAG
NLSLEFIDYSLGEPKYSVEECKERDVTYSASLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYFNGKMDKNGKQGFGATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEYIRNTLEKDNTESTEKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHLKNRLFGQRLAETLADPETG
EIIAEEGTTLDRRTLDKILPNLENGTGFKVYPQVGGVVEDDIVLQSIKIYAPIDDGEKII
NVIGNANVDVSVKNITPADIISSISYFFNLLHGVGITDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDINTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNPYG
FIETPYRRVDPETGKLTDHIDYLTADEEDNYIVAQANSRIADDGSFVDDEVIARFRGENT
AFKRDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGTG
MEHVSAKDSGAAVICKHDGIVEHVEAREIWVRQVKDVDGQEVKGDLNKYRLQKFIRSNQG
TCYNQRPIVSVGDRVTKGEVLGDGPSMEKAELALGRNVLVAFMTWDGYNYEDAIIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEMTRDIPNVGEDALRNLDERGIIRVGAEVKDGDL
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGEGIVLDVKVFNREDGDEL
PPGVNQLVRVYIVQKRKIHQGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARYLGIHVATPVFDGATEEDVWETIEEAGMANDAKTILYDGR
TGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKILSSDDQEIEMRDLEDEDDVNQADTLNIAPESREESEIVASKE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacgacaccgccaacgcagaagttttgcgcgtatt
agcgaagttctagaattaccaaatcttattgaaattcaaacctcttcgtatcaatggttt
cttgatgagggtttgagagaaatgttccaagacatttcgcctattgaagatttcgctgga
aatctatctttagaatttattgattatagtctcggggaaccaaaatactctgttgaagaa
tgtaaagagcgtgatgttacgtattctgcatctcttcgagtaaaagttcgtcttgttaac
aaagagactggtgaagtaaaagaccaagatgtatttatgggtgatttcccgttaatgaca
gaaacaggaacatttatcattaatggagcagaacgggttattgtatcacaacttgttcgt
tcgccaagtgtgtattttaatggaaaaatggataaaaacggaaagcaagggtttggtgca
actgttattccaaaccgtggtgcttggctcgaatacgaaacagatgcaaaagacgtagtt
tatgtacgtattgatcgtacaagaaaattacctgtaactgttcttttgcgtgcactcggg
ttcggctctgatcaagaaatcatcgatctattaggagataacgagtacattcgtaatacg
cttgaaaaggataatacggaaagtacagaaaaggcgttattagaaatctatgaacgtcta
cgtccgggtgaacctccaacagtagaaaacgcaaagagtttgttagtatcacgctttttt
gatccaaaacgctatgatttagcaaatgttggacgttataaaattaataaaaagttacat
ttgaaaaaccgcctatttggtcagagattagcagagacgctagcggatcctgaaacgggt
gaaattatcgcagaagagggaactactcttgaccgtcgtacattagataaaatcttaccg
aatttggaaaacggaactggttttaaagtctatccacaagttggtggtgtggtagaggat
gatatcgttcttcaatccataaaaatctatgctccgattgacgacggagaaaagataatc
aatgtaatcggaaatgctaacgtagatgtgagtgtaaaaaatattacaccagcagatatt
atttcttccattagctatttctttaatttattgcatggtgttggtattacagatgatatc
gatcacttaggtaatcgtcgattacgctctgttggtgaattgttgcagaatcaattccgt
attgggttatctcgtatggaaagagtcgtacgtgaaagaatgtccatccaggatattaac
acaatcacaccgcaacaattaattaacattcgtccggttatcgcggctattaaagaattc
tttggtagttcacagctttcgcaatttatggatcaaaccaatccgttagcagaattaaca
cataaacgtagactttccgcgttaggacctggtggtttaactcgtgaacgtgcaggcatg
gaagtacgtgacgttcactactcccattatggtcgtatgtgtccaattgaaacgcctgag
ggaccaaacattggtttgattaactcgctttcatcatatgcgaaagtaaatccatatgga
tttatcgaaacgccttaccgccgcgttgatcctgaaactggaaagttaacagatcacatt
gattatttgacagcggatgaggaagacaattacattgttgcacaggcaaattccagaatt
gcggatgatggctcatttgtcgatgatgaagttattgctcgttttagaggtgaaaatact
gcttttaaacgtgaccgtattgattatatggacgtatcacctaaacaagtagtttctgct
gcgactgcatgtatcccattcttagaaaatgacgattcaaaccgtgcgttaatgggagcg
aacatgcaacgtcaagcagtgcctctaatgcagccagaagctccaattgttggtacaggt
atggaacatgtttctgctaaagactctggtgcggctgtaatttgtaaacatgatggaatt
gttgaacatgttgaagcacgtgaaatttgggtacgtcaagttaaagacgttgatggccaa
gaagttaaaggtgatttaaataaatatcgcctacaaaaatttattcgttcaaaccaagga
acatgctacaaccaacgtccaattgttagtgttggagatcgtgttacaaaaggcgaagta
cttggtgacggaccttctatggaaaaagcagaactagcactaggtcgaaatgttctagta
gcatttatgacttgggacggctacaactatgaagatgccattatcatgagcgaaagactt
gttaaagatgatgtttacacatctatccatatagaagaatatgaatctgaagcccgagat
acgaaactagggccagaagaaatgacacgtgatattcctaacgttggggaagacgcttta
cgtaacctagatgaacgtggaattatccgtgttggagcagaagtaaaagacggagatctg
ctagtcggtaaagtaacgccaaaaggtgtgacggaacttacagctgaagaacgtttatta
catgcaatttttggtgaaaaagcgcgtgaagtgcgtgatacatcactgcgtgtacctcat
ggtggggaaggaattgtcttagatgttaaagtctttaaccgtgaagatggagacgaactt
ccaccgggtgttaatcagctagtgcgtgtatacattgtacaaaaacgtaaaattcatcaa
ggggataaaatggcgggacgccacggtaacaaaggggtaatttcccgtattctccctgaa
gaagatatgccattcttacctgatggtacaccggtagatattatgttaaatccgctaggg
gttccttctcgtatgaatatcggtcaggtccttgaattacatttaggtatggcagcgaga
tatctaggtattcatgtagcaaccccagtttttgatggtgctacagaagaagatgtttgg
gaaacaattgaagaagctggaatggcgaatgatgcgaaaacaatcctctatgatggtcga
actggagaaccgtttgataatcgtgtatcagttggtatcatgtatatgattaaattggca
cacatggtagatgataagcttcacgcacgttcgactggaccgtattcacttgttactcaa
cagccacttggtggtaaagcacaattcggtggacaacgttttggtgagatggaggtatgg
gcgcttgaagcatatggtgcagcctatacactacaagaaatcttaacagttaagtctgat
gacgttgtaggtcgtgtgaaaacttatgaagctattgtaaaaggtgaaaatgttcctgaa
ccaggtgttccagaatcatttaaagtattgattaaggaattacaaagtttaggtatggat
gtcaagattctttctagtgatgatcaagaaattgaaatgcgagacttagaagatgaagat
gatgtaaatcaagctgacactttaaacattgcacctgagtctagagaagaatcagaaatt
gttgcctcgaaggaataa
DBGET
integrated database retrieval system
