Brevundimonas vancanneytii: NCTC9239_01067
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Entry
NCTC9239_01067 CDS
T06708
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC9239_01067 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvy03021
]
NCTC9239_01067 (rpoC)
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_01067 (rpoC)
Enzymes [BR:
bvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC9239_01067 (rpoC)
Transcription machinery [BR:
bvy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC9239_01067 (rpoC)
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC9239_01067 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
YnfE
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
VTO13478
UniProt:
A0A4P1JYS9
LinkDB
All DBs
Position
1:1063948..1068141
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYHYQEEFGDDGFTA
EIGAEAVRNLLMAIDLNAEAEKHRAELADNPSELKAKKASKRLKLLEAFIESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKENQPGEGKLFANMGEIDAALD
AQVVKLHTKIKARWTEMNSDGEVVTKVIDTTPGRMKLGALLPLNPNIGYKLLEKNLTKKE
IGNLIDQVYRHCGQKATVIFADQMMQMGFREAAKAGISVGKDDIVIPAKKEQLVNETRTQ
VEEYEQQYADGLITKGEKYNKVVDAWAKATDKIADEMMGEIAQPRVLIKGQEPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEEDCGSTRGITLRAVVEGGDVLVSLGQRVLGRYA
AEDIKEPGGEVLFPADTYLQEEEVELIDKVGVQSIKVRSALTCEADAGICGMCYGRDLAR
GTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFFEATNAGVIKVVGPTVI
AAHGDPVAMSRNVVVTVTVDGKDRESYKVPYGARLRVKDGGEVVKNQRLAEWDPYTTPIL
TEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGADLRPAMGVTQGDSYAKL
SSGSDARYLLPVGAILSVANGDEVKPGDIIARIPTEGAKTRDITGGLPRVAELFEARRPK
DCAVIAEMDGRVEFGRDYKNKRRIKITPEPDADGNQAEAVEFLIPKGKHISVHDGDLIQK
GDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVEV
IDSAETTLIKGDHVDRVEVDIENAKVEKRGGRIATVQPVLLGITKASLQTRSFISAASFQ
ETTRVLTEASVHGKKDTLEGLKENVIVGRLIPAGTGSYLRSLQKIANERDAELTQAREDA
VEPLPADLALELEQSAD
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcaccccgaccttcgaccag
atcaagatcgccctggcctcgccggagaagatccgttcgtggtcgttcggcgagatcaag
aagccggaaaccatcaattaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgtatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgttgaagtcacgctggctcgcgttcgccgc
gagcgcatgggtcacatcgacctggccgccccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcatctcgctgatgctggacatggcgctgaaggacgtcgagcgcgtcctg
tacttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagcagaaccagctg
ctgacggaagacgaattctatcactatcaggaagagttcggcgacgacggcttcacggcc
gagatcggcgctgaagccgtccgcaacctgctgatggcgatcgacctgaacgccgaggcc
gagaagcaccgcgccgaactggccgacaacccgtcggagctgaaggccaagaaggcgtcc
aagcgactgaagctgctggaagccttcatcgagtcgggcaacaagcccgagtggatgatc
ctgaccatcgtcccggtcatcccgccggaactgcgtccgctggtgccgctggacggcggc
cgcttcgcgacgtcggacctgaacgacctgtatcgccgggtcatcaaccggaacaaccgc
ctgaagcgcctgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaatccgtcgacgccctgttcgacaacggccgtcgcggtcgcgtcatcaccggc
gcgaacaagcgtccgctgaagtcgctggccgacatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggc
cccgagctgaagctgcacgagtgcggcctgcccaagaagatggcgctggagctgttcaag
ccgttcatctacgcgcgtctggacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtcgagcgcgaacagcccgccgtctgggacatcctggacgaggtcatccgcgag
cacccggtcctgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgag
cccaagctgatcgagggcaaggccatccgcctgcacccgctggtctgtacggcgttcaac
gctgacttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcccagctg
gaagcgcgcgtgctgatgatgtcgacgaacaacattctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatcgtcctgggcctatactacctgtcgctggtcaaggag
aaccagccgggcgagggcaagctgttcgccaacatgggcgagatcgacgcggccctggac
gcccaggtcgtcaagctgcacaccaagatcaaggcgcgctggaccgagatgaactcggac
ggcgaagtcgtgaccaaggtgatcgacaccacgccgggccggatgaagctgggcgctctg
ctgccgctgaacccgaacatcggctacaagcttcttgagaagaacctgaccaagaaggaa
atcggcaacctgatcgatcaggtctaccgtcactgcggtcagaaggcgacggtcatcttc
gccgaccagatgatgcagatgggcttccgtgaagcggccaaggccggcatctcggtgggc
aaggacgacatcgtcatcccggccaagaaggaacagctggtcaacgagacccgcacccag
gtggaagagtacgagcagcaatatgctgacggcctgatcaccaagggcgagaagtacaac
aaggtcgtcgacgcctgggccaaggccacggacaagatcgccgatgagatgatgggcgag
atcgctcagccgcgcgtcctgatcaagggtcaggagccggacatcaactcggtcttcatg
atggccaactcgggcgctcgtggctcgcaggctcagatgaagcagctgggcggcatgcgc
ggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgccaactcgggttacctgacccgccgtctggtggacgtggcg
caggactccatcgtcaccgaggaagactgcggctcgacgcgcggcatcaccctgcgcgcc
gtggtcgaaggcggcgacgtgctcgtctcgctgggccagcgcgtcctgggccgttacgcg
gccgaggacatcaaggagccgggcggcgaagtcctgttccctgcggacacctatctgcag
gaagaggaagtcgagctgatcgacaaggtcggcgtccagtccatcaaggtccgttcggcc
ctgacgtgtgaagccgacgccggcatctgcggcatgtgctacggccgtgacctggcgcgc
ggcaccaacgtcaacatcggcgaagcggtcggcgtcatcgccgcccagtcgatcggcgag
ccgggcacccagctgacgatgcgtaccttccacatcggcggtacggctcaggttgcggaa
acctcgttcttcgaggcgaccaacgcgggcgtcatcaaggtcgtcggcccgaccgttatc
gccgctcacggcgatccggtggccatgagccgcaacgtcgtggtcaccgtgaccgtcgac
ggcaaggaccgcgaatcctacaaggtgccgtacggcgcgcgcctgcgcgtcaaggacggc
ggcgaggtggtcaagaaccaacgcctggccgagtgggatccctacaccactccgatcctg
acggaagtcggcggcgtggtgcgcttcgaggatctggtcgagggcctgtcggtcaaggaa
gagacggacgaggccacgggcatcgcccaacgcgtcgtctccgactggcgcgccagcccg
cgcggcgcggacctgcgtccggccatgggcgtcacccagggcgacagctacgccaagctg
tcgagcggttctgacgcgcgttacctgctgcccgtgggggccatcctgtcggtggccaac
ggcgacgaggtcaagccgggcgacatcatcgcccgtatcccgaccgaaggcgccaagacc
cgcgacatcaccggcggtctgccgcgcgtggccgaactgttcgaagctcgtcgtccgaag
gactgcgcggtcatcgccgagatggacggccgtgtcgaattcggtcgcgactacaagaac
aagcgccgcatcaagatcaccccggagccggatgccgacggcaaccaggccgaggcggtc
gagttcctgatcccgaagggcaagcacatctccgtccacgacggcgatctgatccagaag
ggcgactacatcatcgacggcaacccggatccgcacgacctgctgcgtatccagggcgtc
gaggcgttggccgagtatctggtgaacgaagtgcaggaggtctaccgactgcagggcgtg
ccgatcaacgacaagcacatcgaagtcatcgtccgtcagatgctgcagaaggtcgaggtc
atcgactccgccgagacgacgctcatcaagggcgaccacgtcgatcgggtcgaagtcgac
atcgagaacgccaaggtcgagaagcgcggcggccgcatcgccaccgtgcagccggtcctg
ctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctcgttccag
gagaccacccgcgtcctcaccgaggcttcggtccacggcaagaaggacacgctggaagga
ctgaaggaaaacgtgatcgtgggtcgcctgatcccggcgggcacgggctcctacctgcgc
agcctgcagaagatcgccaacgagcgtgacgctgagctgacccaggcccgcgaagacgcg
gtcgagccgcttcccgcggacctggccctggagctggagcagtcggccgactga
DBGET
integrated database retrieval system
