KEGG   Bipolaris zeicola: COCCADRAFT_34131
Entry
COCCADRAFT_34131  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
bze  Bipolaris zeicola
Pathway
bze03018  RNA degradation
bze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCCADRAFT_34131
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCCADRAFT_34131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_34131
   03041 Spliceosome [BR:bze03041]
    COCCADRAFT_34131
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCCADRAFT_34131
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCCADRAFT_34131
Spliceosome [BR:bze03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCCADRAFT_34131
SSDB
Motif
Pfam: LSM SM-ATX DUF4023 RAM
Other DBs
NCBI-GeneID: 19147682
NCBI-ProteinID: XP_007709211
JGI: 34131
UniProt: W6YFK2
LinkDB
Position
Unknown
AA seq 139 aa
MLPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIY
VRGSTIKYLRVPDEIVEIVKEQQAKDQANRGGRGGGMHGRGDHRGDRGGGGRGTRGRGRG
RGRGGGGGGGGGGGGGGGA
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcttcccttgggccttctcacggccgcgaccggccacccaatgctcgttgagctcaag
agcggcgagacactcaatgggctcctggtcaactgcgacacttggatgaaccttaccctg
cgagaggtcgtacaaacaagcgcagatggcgacaagttcatgaggctgccagagatctat
gttcgcggtagcacaataaaatacctacgagtacctgacgagattgtcgaaattgtaaag
gagcaacaggccaaggaccaagcgaatcggggcggacgaggaggtggcatgcatgggcga
ggagaccaccgcggcgatcgtggcgggggaggtagggggacgaggggcagaggacgcggt
cgtggcagaggcggtggtggtggtggaggaggaggtggtggcggcggtggtggtgcttga

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