Bipolaris zeicola: COCCADRAFT_5655
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Entry
COCCADRAFT_5655 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bze
Bipolaris zeicola
Pathway
bze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCCADRAFT_5655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_5655
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCCADRAFT_5655
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCCADRAFT_5655
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
Prion
Motif
Other DBs
NCBI-GeneID:
19150156
NCBI-ProteinID:
XP_007713003
JGI:
5655
UniProt:
W6YB28
LinkDB
All DBs
Position
Unknown
AA seq
2287 aa
AA seq
DB search
MSQQHPWGAPRQSQSTRLAPISTAFAHDHHLHQHQHQQRNPSTPSPNPSRHAQSPATAHF
PSLPPASSSTSSPFSPAGQQLPASQLLSSRGSRTIAPQAASHLASSAAAATQGASAQSNS
GGGASKLVRASPSLSVSSTTGSPSTSAHSSAASSQNLSRIVIAQIFLLLSQFGPVKDDKD
RAKWDTQTEQIRKLVDTNGMEVFTKYFRRVLQNNAATIFGSGARNADPNGSYQILLTEVL
KIRKDPEQADKIAESISTSEGDLFRDFDLATFISHFKLDSVAKTMLALACRRTDLRSKAD
AVLSTIGDDLLMAIAQPAQPDDMNHEYLAALVERLLQDPPPGWDEEKKMSLAYAVQMRYQ
QTHQQIPGIVESKLILVELTDGARNPLVKLLKQAGPQGTATVEACKEVLASAETRDISYQ
QVAAVLLYLALSTGYNAKNFVAALREHRTGQRIDWQDVVLAFDRDHLRIERHQFLAIYNA
LLPVAQENEKFDIQALWGGQWQHDLTQLYFVVAFLSSTRQELDVTQIPRLRTSYSMKTFE
GASEDARAFAEEAVRHPFVSLDATAALFNMIFQTSETYHTAQLMGIPDLVINPHTAEFLV
AAAAVPKPWGALQEQALKQLFDPYFHKKLPIYNFVLYGLWQQDIQWLVDRFVDAYNADSM
TLTLILEHAETNNWLEPLIRSNTDISLDLAAQAHARGKFELEPWLQQTFDQAGPLFRRIL
TNFLSARAGEEMQRLRDDHQPLNLPLAVKTVYPLLWFLAECGLPEQELLPLQRNCIQAYP
RLINYGEGVDDVIDANGQNGNALPEEADKKMQEHFKNMYSGDSDVRDIISALKKYKESRD
PADQDLFACMIHGLFDEYNCFGEYPLEALATTAVLFGGIINFNLLSRIALQVGLAMVLEA
VQEFRPEDSMYKFGLQALIHFSNRLSEWPNYCDQLLIVPGLQGTEIYAKAEEVVGQQVGE
VNGEGHNGMGMTNGNGVDENLHQEPAVPKFSCLYVDPPLRPELYEDPDEDVQDKVLFVLN
NVSERNLRDKINDLTEAVEERHHQWFANYLVEERAKMQPNFQQLYLDMLDLFNDKMLWAE
VLRETYASVVRMLNTDSTLGSTERGHLKNLGSWLGSLTIARDQPIKFRNISFKDLLHEGY
DSDRLLLVIPFTCKVLVQAAKSTIFKPPNPWLMEMLGVLMELYHFADLKLNQKFEIEVLC
KGLELDHKDIEPTNSIRGRPPVDEEFLGSMVTDGMEAFGDLSIMSLNRGARGPNERFSSA
AMTAALPDFTNQLQYPPSGNSAVPPATLKKIFLTAVNQAIQEIIAPVVERSVTIAAISTS
QLINKDFAMEPDEEKLRNAAHTVVKALSGSLALVTCKEPLRMSIQNNIRLTARDLPDQGL
PEGHIIMFVNDNLDLVCNTVEQAAEMSSLAEIDMQIEEAVRIRRMFRSSRPNEPFKDANI
SPWAFYIPEPYRQMPGGLNREQLAIYEDFGRQSRGAPHVNNTSQDGGRQLPDVLQDQFAA
VPNLPTPGAAPAEPRQPAQQQPRLQSLQAPHAALAQQQPNGYMDAPGLERGQRGVEDLLI
ELTRVIKEAPEERITDLQPGSSSVHQIFDQLISSIEFAGPNKETWAFRIAGQVTNHLFSD
SLSRLEVEVMAHLLSHLCQLSVQTSRQVLMWLATLHDDDRIFKATVMVALMEVNLMDMHR
LNTTIAKAIQERRVAAVEMLSSLMEELLLNEHPSAFRADFAMSIDALTTWLAEDSSLELG
KRVIANLQASPDEQSLTPPTSSHKDQLEYVFDEWVHLQMENMPKKTVGAFIYQLHQQKVL
ETQESSVAFLRTCIDASVIAYEQEHSSPYGSGNEDIATVKVDALGRLIVDLLIYQGEQEG
ATKKSKARYLDQMLVVVVLVLCNHHTTREDAFNQKVFFRLFSTILFHLNDAVKEESLAEQ
KADIFLAVAKALLIVQPSNIQRFAFSWLALVAHRIFVPAMLEEGQDDKRWDIYAQLVETL
LIFTGKLIKPTGETIMTQQFYRGVLRVLLVIHHDFPEFLVENHFRFCNSIPMHCTQLRNL
IVSAYPSTILEMPDPFTAGLKADRLEHDLQAPVIRADIEQILSDAGIKNAIDNLLKGSEL
KDQDVDKVTCAVYYAEPKPAGFELVPTTADPALIHAITLYIGISTLGTGSATAPIFDAES
PATKLIERLAKDFHPEARFHFISAIANQLRFPNTHTHFYSYALLHLFGPPSEDSLASEIQ
ETITRVLLERLLVHRPHPWGLIITLLEILKNRTYAFWELPFVKAAPEVERLLNALFTHAQ
QSPRPIA
NT seq
6864 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcaacacccctggggcgccccgagacaatcccaaagcacacgcctcgctccc
atctccacggcctttgcccacgaccaccacctccaccagcaccagcaccagcagcgcaat
cccagcaccccctcgcccaacccctcgcgccacgcccaatcgcccgccactgctcacttc
ccctcgctgccacccgcctcgtcctcaacgtcgtcgcccttttcgcccgcaggacagcag
ctccccgccagccagctgctgtcctcccgtgggtccaggaccatagcgccccaagctgca
tcgcacctggcttcctccgccgcagccgctactcagggcgccagtgcacagtcaaacagc
ggcggaggagcctccaagctggtccgcgcctcgccctcgctctcagtctcgagcaccacc
ggctctcccagcacctcggcccactcgtctgccgcctcgtcccagaacctctcccgcatc
gtcatcgcacagatatttctcctgcttagccaattcgggccagtcaaggacgacaaggac
cgcgccaagtgggacacgcaaaccgagcagatcaggaagctcgtagacacaaacggcatg
gaggtctttacaaagtacttccgccgtgtgctgcagaacaatgcagccaccatcttcggc
tccggcgcacgcaatgccgaccccaatggcagctaccagatcctgctcaccgaagtgctc
aagatacggaaggatcccgagcaggctgacaagatcgcagagtccatcagcaccagcgag
ggtgatctgttccgtgactttgatctcgccacattcatatctcatttcaaactagactcg
gtcgcaaagacaatgctggcgctcgcctgcaggaggacagatctgcggtccaaagccgac
gcggttctatctaccataggcgatgacttactcatggccatcgcgcagccggcccagcca
gacgacatgaatcatgaatacctcgccgcactcgtcgaacgcctcctccaggacccacca
ccaggctgggatgaagagaagaagatgagcctcgcttacgctgtccagatgcgatatcag
cagacacatcaacagataccaggcatcgtcgaatcaaagttgatactcgtcgagcttact
gacggggcgcgtaaccctctcgtcaaactactcaagcaggcagggccccaaggcacggcg
acggtcgaggcatgcaaagaagtgcttgcatcggctgaaacacgcgacattagctaccag
caagttgctgcagttctgctctaccttgccctttcgaccggatacaatgcgaagaatttt
gtagccgcgctacgtgagcaccggacgggacaacgaatagactggcaagacgtagtgctt
gcctttgaccgagatcaccttcgcatcgagcgacatcaattcctggctatctacaacgca
ttgcttcccgtggcccaggagaatgaaaaattcgacatacaggcactgtggggaggtcaa
tggcaacatgacttgacgcagctgtatttcgtagtggctttcctgtcatctacaaggcag
gagctggacgtgacacagatccccaggctccgcacgtcatactcgatgaagacgtttgaa
ggggcttcagaggatgcaagagcctttgccgaggaggccgtcagacatccatttgtttcg
ctggacgcaacggcggctcttttcaacatgatcttccagacttcagaaacgtaccataca
gctcagctgatgggcatacctgacttggtcatcaacccccacacagcagagttcctcgta
gcagcagcggcagtcccaaagccatggggtgcgttgcaagagcaagcattgaagcagctg
tttgatccttattttcacaagaagttacccatatacaactttgtcctttacggcttgtgg
caacaggatatccaatggctcgtggaccgctttgtcgacgcatacaacgccgactcgatg
accctcactttgatcctcgagcacgccgaaacgaataactggttggagccactgatccgc
agtaacactgatatcagcctcgacttggctgcacaggcacacgcacgtgggaagtttgag
cttgagccctggctacagcagacattcgaccaagctgggccactcttccgtcgcattctg
accaactttctcagtgcgcgggcaggtgaagagatgcaacgcctccgagacgaccatcaa
cctcttaacctgccactagcagtgaagacggtgtacccactcctttggttccttgcagaa
tgcggtctgcccgagcaggaactacttcccctgcagcgaaactgtatccaggcctatcct
cgcctgataaactatggcgagggcgtggacgacgtcatcgacgccaatggccagaatggt
aacgcacttcctgaagaagccgacaaaaagatgcaagagcatttcaagaacatgtacagc
ggcgacagcgatgttagagatatcatctctgctctgaagaagtacaaagaatcccgcgat
cctgcagaccaggacctgtttgcctgcatgattcatggcttgttcgacgagtacaactgt
ttcggagagtacccactcgaagcattggcgacgactgctgtgctttttggcggtatcatc
aacttcaatcttctgtcccgcatcgcacttcaagttgggttagcaatggttctagaagct
gtccaagagttccgtcctgaagacagtatgtataaattcggacttcaggctctcattcac
ttctcgaatcgactgtctgaatggcccaactactgcgaccaacttcttatcgtccctgga
ctccaaggcactgaaatttatgctaaagctgaggaagtagtaggtcagcaagtcggcgaa
gtcaacggcgagggccataacggtatgggcatgactaacggtaacggcgtcgacgagaat
cttcaccaagagccagctgtgcccaagttcagctgtctctatgtcgacccgccactgcgc
ccagaactatacgaggacccagatgaagacgttcaagacaaggtcttgttcgtactgaac
aacgtgtccgagcgtaatctgcgcgacaagatcaacgacctgactgaagctgttgaggaa
agacatcatcagtggttcgccaactacctcgttgaggagcgtgcaaagatgcagcccaac
ttccaacaactgtatctcgacatgcttgacctgtttaatgacaagatgctctgggccgag
gttcttcgagagacatatgccagtgtcgttcgcatgctgaacacagactctaccttggga
tctactgaacgtggccacctgaaaaacctgggttcgtggctcggatccctgaccatagcc
cgcgaccagccaatcaaattccgcaacatttcattcaaggacctgttgcatgagggttac
gattcagaccgcctcctattggtgattccgtttacctgcaaagtattggtacaagccgcg
aagtcaacaatcttcaagcctcccaacccatggttgatggagatgctgggtgtgctcatg
gagctataccactttgctgacctgaagctcaaccagaagttcgagattgaagttctctgc
aagggcttggagcttgatcacaaggacatagagccaactaacagcatccgaggacggccg
ccagttgatgaagaattccttgggtccatggtgacagatggcatggaggccttcggcgac
ctttctatcatgagcctcaatcgcggtgcacgtggtcccaatgaacgcttctcttcagca
gcaatgacggccgctttgcccgatttcaccaaccagcttcaatacccgccttctggaaat
agtgcggttccgccagcaacgcttaagaagattttccttactgcagtcaatcaggctata
caggaaatcattgctcccgtagttgagcgctctgttactattgccgcaatctcgacgtcg
cagctgatcaacaaagactttgccatggaacccgatgaggagaaacttcgcaatgcagca
cacactgttgtcaaagctctttctggttctttggctcttgtcacctgcaaagagcccctc
cgtatgagtatccagaataacatccgcctcacagccagggatcttcctgatcagggactg
ccagagggacatatcatcatgtttgtcaacgacaaccttgacttggtctgcaacacagtt
gagcaggcagctgaaatgtcatccctcgcagaaatcgatatgcaaatcgaagaagccgtc
cgtatacgtcgcatgttccgtagctctcgtccaaatgagcccttcaaggatgcaaatatc
agtccatgggcattctacattccggagccatatagacaaatgcctggcggtctgaatagg
gagcagttggccatttatgaagactttggcaggcagtcgcgaggcgcgccgcacgttaac
aacacctctcaagatggcggtcgacaactcccagatgtcctccaagaccaatttgcggcg
gtgccaaatcttccaacccctggtgctgcaccagctgagccacgacagccggcccagcaa
caacctaggctacagagtcttcaagcaccccatgcagcgctggctcagcaacagcctaac
ggctacatggacgctcctggtctcgagcgaggccagcgtggcgtagaggacctcctcatc
gagttgacccgcgtcatcaaagaggcaccagaggagcgtataacagacctccaacctggt
agcagcagtgtccaccaaatcttcgaccagctcatttcaagcatcgagttcgccggtcct
aacaaagagacatgggccttccgtatcgctggacaagtcacaaaccacctcttctctgac
tccttgagtcgcctggaggtcgaggtcatggctcatctcttgagccatctgtgccaactg
tccgtccagacatcacgacaagtgctgatgtggttggccactcttcatgacgacgaccgt
attttcaaggctacagttatggtggctcttatggaagtcaatctcatggatatgcaccgc
ttgaacacgacaattgccaaggccattcaagaacggcgtgtcgctgcagtagagatgctg
tcaagcctgatggaagagctcttgcttaatgagcacccgagtgctttccgtgccgacttt
gccatgtccatcgacgctctcactacctggctggcagaagactctagcttggagcttgga
aagcgtgtcattgccaacttgcaagcgtcacccgatgagcagtcactgacaccaccaaca
tctagtcacaaggatcaactcgagtacgtctttgacgagtgggtgcatcttcagatggaa
aacatgccaaagaaaaccgttggggctttcatctaccagctccaccaacagaaggtgctg
gagactcaggaatcttcagtcgcatttcttcgcacttgtatcgatgcctctgtcattgca
tatgagcaggaacactcatccccatatggaagtggtaacgaagacattgcgacagttaag
gtcgatgcccttgggcggctcatcgtcgaccttctcatctaccaaggtgaacaagagggt
gctactaagaagagcaaagcgaggtacttggatcagatgctcgtcgtcgtagtgctcgtc
ctttgcaaccaccacaccacccgagaagatgctttcaaccagaaggtgttcttccgccta
ttttcgacgattcttttccacttgaacgatgcagtgaaggaagagtcgttggcagaacaa
aaggcagacattttccttgcagtcgccaaagctcttttgatcgttcagccctccaacatt
caacgctttgccttttcgtggcttgcgttggttgcgcatcgtatctttgtgcctgccatg
ctggaggagggtcaagacgacaagcgttgggacatctacgctcagcttgtggagacgctc
ttgatctttactggaaagctgatcaagcctactggggaaaccatcatgacccaacagttc
taccgcggcgttctacgcgtgttgttggtgatccaccatgacttccccgagttcctggtc
gagaaccatttcaggttctgcaacagcattccaatgcactgcacacagctccgtaacctg
attgtcagcgcatatccatctaccatcctcgagatgccagatccattcactgcgggatta
aaggcagaccgccttgagcacgatcttcaagctcccgtcatccgtgccgatatcgagcag
atactttcagatgcaggcattaagaatgccattgacaatctgctgaagggctctgagctg
aaggaccaggacgtcgacaaggtcacctgcgcagtgtattacgcagagcccaagcctgca
ggctttgagcttgtcccaacgacagccgatccagcgttgatccatgcgatcacattgtat
attggcatatcgactcttggtacaggatcagccacagcgccaatcttcgacgcagagagc
ccagctaccaagctcattgaaaggctggccaaggacttccaccctgaggccaggttccac
tttatcagcgctatcgcgaaccaattgcgtttcccaaacacacatactcacttctacagc
tatgcgctgctgcacctcttcggacccccaagcgaagactcgctggcatcggagattcaa
gagactatcactcgtgtactgttggagcgcctgttggttcaccgcccacacccatggggt
ctcatcatcacgctgttggaaattctaaagaaccgcacatatgcattctgggagctgccg
ttcgtgaaggcggcgcctgaagttgaacgacttctcaacgctctcttcacgcatgctcaa
cagagcccacgcccaatagcttag
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integrated database retrieval system
