Caballeronia sp. SBC2: SBC2_32920
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Entry
SBC2_32920 CDS
T06459
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SBC2_32920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caba03021
]
SBC2_32920 (rpoB)
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_32920 (rpoB)
Enzymes [BR:
caba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SBC2_32920 (rpoB)
Transcription machinery [BR:
caba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SBC2_32920 (rpoB)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SBC2_32920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Nif11
UbiD
Motif
Other DBs
NCBI-ProteinID:
QIE25231
LinkDB
All DBs
Position
complement(3615507..3619613)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQAETIGTQRKAEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEMPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFALMGE
GAQMEFVPERLRGEVARFDIQDREGAVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGETGEVIANANDEITEMVLEKLRESKVKDIQTLYTNDLDQGPYISSTLRID
ETADRMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
VGKMTLEDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANASLGEGGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAERGGIVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DKVGRGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVAEDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFSRLARMLNGKVANGGPKKLAKGTKIDLPYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLQRQTKIEELRAFLTKIYNESGRKEELENFTDDEIVELAKNLREGVPFAT
PVFDGATEGEMERALDLAFPDDIAKQLGMTKSKNQVQLSDGRTGEPFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVAGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaaacgccccatc
gttcaccaggttcccttcttgctggcaacccagcttgaatcattcagcacatttctgcaa
gccgagaccatcgggactcagcgcaaggcagaaggactgcaagcagctttttcatcggtt
ttcccgatcgtttcgcacaatggctttgcgcgtctcgaattcgtgagctacatgctctcg
ccgccggcgttcaacatcaaggaatgccagcagcgtggcctgacgtactgttccgccttg
cgcgccaaggtgcgcctggtgctgctcgacaaagaatcgccgagcaagccagtcgtcaag
gaagtgaaggaacaggaagtctacatgggcgaaatgccgctcatgacgccaacaggttcg
ttcgttatcaacggtacggaacgcgtgatcgtgtcccagctgcaccgttcgcctggcgtg
tttttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggctcgt
atcattccttaccgtggttcgtggctcgacttcgaattcgatccgaaggacgtgctgtat
ttccgcgtcgaccgtcgccggaaaatgcctgtgactatcttgctgaaggccattggcctg
acgccggaacagatactcgcgaacttcttcgtattcgataacttcgcgttgatgggcgaa
ggcgcgcaaatggaattcgtgccggagcgtctgcgcggtgaagtcgcgcgcttcgacatc
caggatcgcgaaggcgcggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgaagctgcaaagacgaagttcatttcggtaccggaagactacttgctcggc
cgcgtgctggcaaagaatgtggtcgacggcgaaacgggcgaagtgatcgcgaacgccaac
gacgagatcaccgaaatggtgctcgagaagctgcgcgagtcgaaggtcaaggacattcag
acgctttacacgaacgatctggatcaaggtccgtacatttcgtcgacgctgcgtatcgat
gaaaccgctgaccgcatggccgcacgtatcgcgatctatcgcatgatgcgtccgggcgaa
ccgccgacggaagaagctgttgaagcgctgttcaaccgcctgttctacagcgaagacgca
tacgacctgtcgaaggtaggtcgtatgaagttcaaccgccgtgtgggccgcgacgagatc
gtcggcaagatgacgctggaagacgacgacattctcgcgaccatcaagattttggtcgag
ctgcgtaacggcaagggcgaagtcgatgacatcgatcacttgggcaatcgccgtgtgcgt
tgcgtgggtgagttggctgagaatcagttccgcgcaggccttgtacgcgtggaacgggct
gtgaaggagcgtctgggtcaggctgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcagctattcgtgagttctttggttcgtcgcagttgtcgcagttt
atggaccaaacgaacccgttgtcggaaatcacccacaagcgccgtgtttcggctcttgga
ccgggcggtttgacgcgtgaacgcgcaggctttgaagtccgcgacgtgcacccgacccac
tacggccgtgtgtgcccgattgaaacgccggaaggtccgaacatcgggctgatcaactcg
ctggcgctctacgcacacttgaacgaatacggtttcctcgagacgccgtatcggaaagtg
gtcgacagcaaggtgacggatcagatcgactatctgtcggcgattgaggaaggccgctac
gtgatcgctcaggcgaacgcgtcgctgggcgaaggcggcacgctgaccgacgagctggtt
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggatcgcatccagtacatggac
gtggcgccgtcgcagatcgtctccgtggctgcttcgctgattccgttccttgaacacgat
gacgcgaaccgcgcattgatgggctcgaacatgcagcgtcaggcagttccttgcctgcgt
cctgaaaaggctgtggtcggtacgggtattgaacgcacggtggcagtcgactcgggtacg
acggttcaggcggaacgcggcggtatcgtcgattacgtcgatgctggccgtatcgtgatt
cgcgtgaacgacgacgaagcggttgccggcgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaaggtcggc
gacaaggttggccgtggcgacgtagtggccgacggcgcatcgaccgatctgggcgagctc
gcgctcggccagaacatgctggtcgcgttcatgccatggaacggctacaacttcgaagat
tcgatcctgatctcggagaaggtggttgctgaagatcgttacacgtcgatccacatcgaa
gaactgaatgtggtcgcgcgcgatacgaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggctgaagtgcaactcggccgtctcgatgagtcgggcattgtgtatatcggc
gcggaagtggaagcgggcgatgtgctggtcggtaaggtcacgccgaagggcgaaacccaa
ctgacgccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtcggacgtgaag
gatacgtcgctgcgcgtgccgtcgggcatgagcggaacggtgatcgacgtgcaagtgttc
acgcgcgaaggcattacgcgtgacaagcgtgcacagcagattattgatgacgaactgaag
cgttatcgcctggacttgaacgaccagttgcgcattgtggaaggcgacgcattctcgcgt
ctcgcccgtatgctcaatggcaaggtcgcgaacggcggtccgaagaagctggcgaagggc
acgaagatcgacctgccgtacctggaagatctggatcactaccactggttcgacatccgc
ctcgcggacgaagaagcagcggctcagctcgaagctatcaaggattccatcgaacaaaag
cgtcaccagttcgatctggcgttcgaagaaaagcgcaagaagctgacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctggctgtgaagcgtcgtctgcaa
ccgggcgacaagatggccggccgtcacggtaacaagggtgttgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggctgacgtcgtgctgaatccgctc
ggcgtgccgtcacggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctgggatggcgtatcggcgaaatgctgcagcgtcagaccaagattgaagagttg
cgtgctttcctgaccaagatctacaacgagtcgggccgtaaggaagagctggaaaacttc
accgacgacgagatcgtcgaactggcgaagaacctgcgcgaaggtgttccttttgcaacg
ccggtgttcgacggtgcaacggaaggcgaaatggaacgtgcgctggatctggcgttccct
gacgacatcgcgaagcagttgggcatgacgaagtcgaagaaccaggtgcagttgagcgac
ggccgcacgggtgaaccgttcgaacggacggtcacggtgggctacatgcattacctgaaa
ctgcatcacttggtcgacgacaagatgcacgcccgttcgaccggaccgtactcgcttgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggccagcgtttcggtgagatggaa
gtgtgggcgctcgaagcatatggcgcttcgtacgtgctgcaagaaatgctgactgttaag
tcggatgacgtggcgggtcgtaccaaggtgtatgaaaacctggtcaagggtgaccacgtg
atcgacgccggcatgcctgagtcgttcaatgtgttggtgaaggaaatccggtcgctcggt
atcgacatcgacctggaccggaactaa
DBGET
integrated database retrieval system
