Caballeronia sp. SBC2: SBC2_57830
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Entry
SBC2_57830 CDS
T06459
Symbol
hfq_2
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
caba
Caballeronia sp. SBC2
Pathway
caba02024
Quorum sensing
caba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBC2_57830 (hfq_2)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SBC2_57830 (hfq_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caba03019
]
SBC2_57830 (hfq_2)
03036 Chromosome and associated proteins [BR:
caba03036
]
SBC2_57830 (hfq_2)
Messenger RNA biogenesis [BR:
caba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SBC2_57830 (hfq_2)
Chromosome and associated proteins [BR:
caba03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SBC2_57830 (hfq_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
MRM3-like_sub_bind
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QIE27708
LinkDB
All DBs
Position
pSBC2-2:355890..356219
Genome browser
AA seq
109 aa
AA seq
DB search
MATEPQQQSQSDVLNAARKERKRVAIFLVNGVRLVGHIESFDQYLVMLSSAAGIQAVYKH
SISTIQEDTGKPFTAGAARTGTGAPRDADSKRPVAISHKRRLPMNMGGE
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atggctacagaaccccagcagcaaagtcagagcgacgtgcttaacgccgcccgcaaagag
cgtaagcgtgtcgcaattttcctcgtcaacggggtacggttggttggccacatcgaatcg
ttcgaccagtatctggtcatgctgagttccgccgccggcattcaggcggtttacaagcac
tcgatttcgaccatccaggaagacacgggcaaaccattcaccgccggggcggcacgcacc
ggcacgggcgcaccgcgggacgcggactcaaagcgtcccgttgcaatttcccataagcgg
cgtttgccgatgaatatgggcggcgaatga
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