KEGG   Caballeronia sp. SBC2: SBC2_57830
Entry
SBC2_57830        CDS       T06459                                 
Symbol
hfq_2
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
caba  Caballeronia sp. SBC2
Pathway
caba02024  Quorum sensing
caba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:caba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SBC2_57830 (hfq_2)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SBC2_57830 (hfq_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caba03019]
    SBC2_57830 (hfq_2)
   03036 Chromosome and associated proteins [BR:caba03036]
    SBC2_57830 (hfq_2)
Messenger RNA biogenesis [BR:caba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SBC2_57830 (hfq_2)
Chromosome and associated proteins [BR:caba03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SBC2_57830 (hfq_2)
SSDB
Motif
Pfam: Hfq LSM MRM3-like_sub_bind Hfq_1
Other DBs
NCBI-ProteinID: QIE27708
LinkDB
Position
pSBC2-2:355890..356219
AA seq 109 aa
MATEPQQQSQSDVLNAARKERKRVAIFLVNGVRLVGHIESFDQYLVMLSSAAGIQAVYKH
SISTIQEDTGKPFTAGAARTGTGAPRDADSKRPVAISHKRRLPMNMGGE
NT seq 330 nt   +upstreamnt  +downstreamnt
atggctacagaaccccagcagcaaagtcagagcgacgtgcttaacgccgcccgcaaagag
cgtaagcgtgtcgcaattttcctcgtcaacggggtacggttggttggccacatcgaatcg
ttcgaccagtatctggtcatgctgagttccgccgccggcattcaggcggtttacaagcac
tcgatttcgaccatccaggaagacacgggcaaaccattcaccgccggggcggcacgcacc
ggcacgggcgcaccgcgggacgcggactcaaagcgtcccgttgcaatttcccataagcgg
cgtttgccgatgaatatgggcggcgaatga

DBGET integrated database retrieval system