Chelonoidis abingdonii (Abingdon island giant tortoise): 116827543
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Entry
116827543 CDS
T07367
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116827543 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116827543 (CNOT1)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116827543 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116827543 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
116827543
NCBI-ProteinID:
XP_032641076
Ensembl:
ENSCABG00000021278
LinkDB
All DBs
Position
Unknown
AA seq
2148 aa
AA seq
DB search
MDRILPDSGGIAKMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTASQVARVLGM
MARTHSGLTEGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKE
VTYELDHPGFQLRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINP
EIFCFADYPCHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFP
IKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQ
LIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLK
LDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQ
ACAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAG
MASLSLGGSAVPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTAFSGIGGLSSQL
PVGGLTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEA
NQHFTKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIA
ALDRFKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIA
LAQAQAQAQVPAKAPLAGQVSTIVTTSTTTTTVAKTITITRPTGVSFKKDVPPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPP
NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQ
LSAPKKDVKQPEELPPITTTTASTTPATNTTCTASVPPQPQYSYHDINVYSLGGLAPHIT
LNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEES
RMRVAAHHMMRNLTAGMAMITCREPLMMSIATNLKNSFATALRAASPQQREMMEQAAAQL
AQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPE
QIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKC
MTELEQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSG
ADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNH
LVTMQQYDLHLAQSMENGLNYMAVAFAMQLVRILLVDERSVAHVTEADLFHTIETLMRIN
AHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYL
LREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVE
ISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLG
IVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRP
TKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPM
QILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTP
NLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGN
RYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLN
AIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIE
LIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggataggatcctgcctgattctggagggatagccaaaatgatggagagctctctggca
gacttcatgcaagaagtaggctacggcttttgtacaagtgttgaagaatgtcgcaacata
atcatgcagtttggtgttcgggaggtaacagcttcccaggttgccagggttttgggaatg
atggctcgaactcattcggggttgacagagggtattccattacaatctatttcggctcct
ggcagtgggatctggagtgatgggaaggataaaagcgatggaacacaagcccatacctgg
aatgtggaggtcttgattgatgttcttaaagagctgaatcctagtttgaacttcaaggaa
gtaacctatgaactggaccaccctgggtttcaacttcgtgacagcaagggtctgcagatt
gtggtgtacggtatccaaagagggctcggcatggaagtcttcccagttgatctcatatac
agaccttggaaacatgccgagggccagctctccttcatccagcattccctcataaaccca
gagatcttctgttttgctgactacccttgtcatgctgttgccacagacatcctgaaagca
ccaccagaggatgacaatcgagaaattgccacatggaagagcctggatttgattgagtct
ctgttgcggttggcagaagtgggacagtatgaacaagttaagcagctcttcagtttccct
atcaagcactgcccagatatgttggtattggccttattacagatcaacacttcctggcat
accttacgccatgaactcatctctacacttatgccaattttccttggcaaccaccccaac
tctgccatcattttgcactatgcgtggcatggacagggccagtctccttcaatacgccaa
cttatcatgcatgcaatggctgaatggtacatgagaggggagcagtatgaccaggcaaaa
ttgtcacgcattcttgatgttgcccaggacctgaaggccttgtcaatgctgctaaatggt
actccatttgcctttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaa
cttgacaaatggctcacagataaaattcgggagcatggggagcccttcatccaggcctgt
atgaccttcttaaagagacgatgcccatctattttggggggccttgccccagaaaaagac
cagcccaaaagtgctcagcttcctccagaaacactggcaactatgttggcctgcctacaa
gcttgtgctgggagtgtttctcaggagctgtcagagaccatcctcactatggtagccaat
tgcagtaatgtcatgaacaaggctagacagccaccacctggagtcatgccaaagggacgt
ccaccaagtgctagcagcttggatgccatctctcctgtacagattgacccgcttgctggg
atggcatctcttagtttaggtggttcagctgttccacatacccagagtatgcaaggcttc
cctccaaacttgggttctgctttcagtacacctcagtcaccagcaaaagcatttcctccc
ctttccacccaaaatcagacaactgctttcagtggcattggaggactctcttcacaactt
ccagtaggtggtcttactacgggtagcctaactggtatagggactggggcccttggcctc
cctgcagtgaacaacgatccatttgtgcaaaggaaactgagtacatctggactgaaccag
cctacattccagcagagtaagatgaaaccttctgacttatctcaggtgtggccagaggca
aatcagcactttactaaagaaatagatgatgaggcaaacagctactttcagcgcatttat
aatcatccaccacaccccaccatgtctgtagatgaggtgttagaaatgctacagaggttt
aaggactccaacattaagcgggaacgagaagtgtttaactgtatgctgaggaacttgttt
gaggagtaccgttttttcccccaatacccagacaaagagctgcacataacagcctgcctc
tttggtgggataatagagaaaggactggttacttacatggcattgggcctggccctgcgc
tatgttcttgaagccttgcgaaagccttttgcatccaaaatgtactattttggtattgct
gcactagataggtttaaaaatagattgaaggactatccccagtattgtcagcacttggct
tctattagtcactttatacagttccctcatcacctacaggagtacattgaatatggacag
cagtccagagatcctcctgtgaagatgcagggttcaatcaccactcctggaagtattgca
cttgcccaggctcaggcccaggcccaggttccagcaaaagctcctctggctggccaagtc
agcactatagtaaccacctccaccaccactaccactgtagcaaaaaccattacaatcacc
cgtccgactggagtcagcttcaaaaaggatgtgccgccttccattaatactaccaacatc
gataccttgcttgtggcaacagatcaaacagagagaattgtggagcccccagaaaatgtt
caggaaaaaattgctttcatattcaataatctgtctcaatcaaacatgacacagaaggtt
gaggagctgaaggaaactgtgaaagaggagttcatgccttgggtttcacagtatcttgtg
atgaagagagttagtattgagccaaattttcacagcctatattcaaatttccttgacact
cttaagaatccagagtttaacaagatggttctgaatgaaacctacagaaatatcaaggtg
ctactgacatcagataaagctgcagcaaacttctctgaccgttcccttctgaagaacctt
ggccactggctgggaatgatcacgttggctaaaaataaacccatcttgcacacggatttg
gatgtgaaatcgttacttctggaggcttacgttaaggggcaacaggagttgctttatgta
gtaccatttgttgccaaagtcttagaatccagtgtcaggagtgtggttttcaggcctcca
aacccctggacgatggcaatcatgaacgttttagctgagctgcatcaagaacatgactta
aaactaaatctgaaatttgagattgaggtgctctgcaagaaccttgcactagacatcaat
gagctgaaacctggaaacctcctgaaagacaaggatcggttgaaaaatttggatgaacag
ctgtctgctccaaagaaggatgtaaaacagccggaggagctgccaccaatcacaacaacc
actgcttctacaaccccagctactaacaccacttgtacagcatccgttcctccacaacct
cagtacagttaccatgacatcaatgtctactctctgggagggctggctccacacattact
ctaaatcctactattccactgttccaggcccacccacagctaaagcagtgtgtgcgtcaa
gctatagagcgtgcagtgcaagagcttgtccatccagtggtagaccggtccattaagatt
gccatgactacctgtgaacagatagtcagaaaggactttgcactggattcagaggagtca
cgcatgcgtgtagcggcacaccacatgatgcggaacctgactgctggtatggccatgatt
acctgcagggaacctctgatgatgagcatcgctaccaacttgaagaacagttttgctact
gcgctgcgggcagcatccccacagcagagggagatgatggagcaggcagctgcacagtta
gctcaggataactgtgaattagcatgttgcttcattcagaagacagctgtggaaaaggca
ggccctgaaatggacaagaggctggcaactgaatttgagctcagaaagcatgctagacaa
gagggtcgtcggtactgtgatcctgttgtattaacttaccaggctgaacgaatgccagag
cagatcagattgaaggttggtggtgtggacccaaaacagctggctgtttatgaagagttt
gcccgcaatgtccccggcttcttgcctaccaatgatttaacccaacccacaggattcttg
gctcagcctatgaagcaagcttgggctacagatgatgtagcacagatctatgataaatgt
atgactgaactggaacaacacctacaatccataccacataccctggccatgaacccacaa
gctcaagccttacgcagtctgttggaggctgtagtagtggctcgtaactcccgtgatgct
atagctgcgcttggactgctccagaaggctgttgagggcttattggatgccaccagtggt
gcagatgctgacctcctgctccgctaccgtgagtgtcacctacttgtactgaaagctctg
caggatggccgtgcctatgggtctccatggtgtaacaagcagatcaccaggtgcttgatt
gaatgccgggatgagtataagtacaatgtagaagctgtggagctgctaatccgcaatcac
cttgttaccatgcagcagtacgatcttcacttggcacagtcaatggagaatggcttgaac
tacatggcagtggcatttgccatgcagttggtgaggatcttgttggtggatgagaggagt
gtagcccatgtgacagaggcagatctgttccacaccattgagactctgatgaggattaat
gctcactccagagggaatgctccagaaggattaccccagctgatggaagtggtccgatcc
aactatgaagcaatgattgaccgtgctcatggaggccctaacttcatgatgcattctggg
atctcccaagcctctgagtatgatgatccaccaggcctgagggagaaggcagagtatcta
ctgagggaatgggtgaatctctaccattcagctgcagctggtcgtgacagtaccaaagct
ttctctgcgtttgttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatc
ctgaaaacggatgacctgataactcggttctttcgtctttgcactgaaatgtgtgttgaa
atcagctatcgtgctcaggctgagcagcagcacaatccagccgccaatcccaccatgatc
agagccaaatgctaccacaacctggatgcctttgtgcggcttattgcactgctagtgaag
cactctggggaggcaaccaacactgtcacaaagatcaacctactgaacaaggttcttggt
atagtggtgggagttctcctccaggaccatgatgttcgtcagagtgagtttcagcagctt
ccttaccaccgcattttcatcatgttgctgttagaattaaatgcgcctgaacatgtgctg
gagaccatcaacttccagacccttacagccttctgtaacacatttcacatcctgaggcct
acaaaagctccgggttttgtttatgcctggctggaactgatctcccatcggatatttatt
gcgagaatgctggcacatacaccacagcagaagggttggcctatgtatgcccagctgcta
attgatctcttcaagtacttggctcctttccttagaaatgtggaactcactaaacctatg
caaattctctacaagggcactctgcgtgtgttgctggtcttattgcatgatttcccagaa
ttcctttgtgactaccactatgggttctgtgatgtgatcccaccaaactgtatccagcta
aggaatctgatcctgagtgccttcccacgtaacatgagacttccagatcctttcactccc
aatcttaaagtggacatgttaagcgagattaatattgcaccacgaatactcaccaacttt
actggagtgatgccacctcagttcaaaaaagatttggattcctatctcaaaactcgctcg
cctgtcactttcctgtctgacttgcgcagcaatctacaggtatcaaacgaacctggcaat
cgctacaacatccagctgattaatgcactggtgctctatgtaggcactcaggctattgca
catattcacaacaaaggcagcacaccctctatgagcactatcacccattcggctcacatg
gacattttccagaacttggctgtggacctggacacagaaggtcggtacctcttcttgaat
gcaattgccaatcagctgcggtacccaaacagccatacgcactatttcagttgtactatg
ctttacctatttgcagaggccaatactgaggctatccaggaacagatcactagggtactg
ttggaacgactgattgtaaatagacctcacccatggggtctccttattaccttcattgag
ctgataaaaaatccagcatttaaattctggaaccatgagtttgttcactgtgctccggaa
attgagaagttatttcagtcagttgcgcagtgctgcatggggcagaagcaggcacagcaa
gtgatggaaggcactggtgccagttag
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integrated database retrieval system
