Caballeronia sp. NK8: NK8_25880
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Entry
NK8_25880 CDS
T09553
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NK8_25880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cabk03021
]
NK8_25880 (rpoB)
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_25880 (rpoB)
Enzymes [BR:
cabk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NK8_25880 (rpoB)
Transcription machinery [BR:
cabk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NK8_25880 (rpoB)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NK8_25880 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
UbiD
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
BCQ24423
LinkDB
All DBs
Position
1:complement(2714894..2719000)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFQTFLQADTSSSQRKSEGLQAAFTSV
FPIVSHNGFARLEFVSYMLSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFGLMSE
GAQMEFVPERLRGEVARFDIQDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEEYLLG
RVLAKNVIDPETGEVIANANEEITETVLEKLREAKVKDIQTLYTNDLDQGPYISSTLRID
ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
IGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVADDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAAAGDVGVDIYNLIKYTRSNQNTNINQRPIAKVG
DKVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLNGKVANGGPKKLAKGTKIDLPYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLERQTKIEELRQFLTKIYNESGRKEELESFSDDEIFELAKNLREGVPFAT
PVFDGATEEEMGRALDLAYPDNIATNLGMNSSKNQVQLHDGRTGEPFERKVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttccctttttgctggcgacccagcttgaatcattccagacgtttctgcaa
gcagacacgtcgtcgtcgcagcgcaagtcagaaggcttgcaggctgcgttcacctctgtt
ttcccgattgtctcgcacaacggttttgcacggctcgaattcgtcagctacatgctgtcg
tcgcccgcattcaacatcaaggaatgccagcagcgcggcctgacgtactgctcggccctg
cgcgcgaaagtgcgtctggttttgctcgataaggaatcgccgagcaagcccgtcgtcaag
gaagtgaaggaacaggaagtgtacatgggcgaaattccgctcatgacgccgactggttcg
ttcgtcatcaacggtaccgagcgcgtgatcgtgtcgcagctccaccgttcgcctggcgtg
ttcttcgagcacgacaagggcaagacgcacagctccggcaagctgctgttctcggcgcgg
atcattccttaccgcggctcgtggctcgacttcgaattcgacccgaaggacgtgctgtat
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctcaaagccatcggcatg
acgccggagcagatcctcgcgaacttcttcgtgttcgacaacttcggcctgatgagcgaa
ggcgcgcaaatggaattcgttcctgagcgtctgcgcggcgaagtcgcgcgcttcgacatc
caggatcgcgacggcaacgtcatcgtcacgaaagacaagcggatcaacgcgaagcacatt
cgcgacctcgaaaacgccaagacgaagttcatctcggtgcccgaggaatatttgctcggc
cgcgtgctggcgaagaacgtgatcgatccggaaacgggcgaagtgatcgcgaacgcgaac
gaggaaatcacggaaacggtcctcgaaaagctgcgcgaagcaaaggtcaaggacatccag
acgctctacacgaacgatctggaccagggcccgtatatctcgtcgacgctgcgtatcgat
gaaaccgcggacaagatggccgcgcgcatcgcgatctaccgcatgatgcgtccgggggaa
ccgccgaccgaagaagcggtcgaggcgttgttcaaccgtctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgtatgaagttcaaccgccgcgtcggccgtgacgagatc
attggaccgatgacgctgcaggacgacgacatcctcgcgaccatcaagatcctcgtcgag
ctgcgtaacggcaagggcgaagtggacgacatcgaccacttgggcaatcgtcgcgtgcgt
tgcgtgggcgaactcgcggagaaccagttccgcgcgggtctcgtacgtgtcgaacgtgca
gtgaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcctcggcgattcgcgagttcttcggttcgtcgcagctttcgcagttc
atggaccaaaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcatccgacgcac
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctcgcgctgtacgcgcacctgaacgagtacggcttcctcgaaacgccgtaccgcaaggtc
gtggacagcaaggtgaccgaccagatcgattacctgtcggcgattgaagaaggccgttac
gtgatcgctcaggcgaacgcggcagtggccgacgacggcacgctgaccgacgaactcgtg
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggctgcatcgctgattccgttcctcgagcacgac
gacgcgaaccgcgcgttgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgc
ccggagaagccggtcgtcggtaccggcatcgagcgcacggtggcggtggactcgggtacg
accgtgcaggcgctgcgtggcggtgtggtggattacgtcgacgcgggccgtatcgtgatt
cgcgtgaacgacgatgaagccgcagccggcgacgtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgcgaaggtcggc
gacaaggtctcgcgcggcgacgtgctggccgacggcgcctcgacggatctgggcgagctc
gcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggaaaaggtcgtggccgacgatcgctacacgtcgatccacatcgag
gagttgaatgtcgttgctcgcgacacgaagctcggaccggaagaaatcacgcgcgatatt
tcgaacctcgcggaagtgcagcttggccgtctcgacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagcaggcgacgtgctggtcggcaaggtcacgccgaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcacggtgatcgacgtgcaggtgttc
acgcgcgaaggcatcacgcgcgacaagcgcgcgcaacagatcatcgacgacgaactgaag
cgctatcgcctcgacctgaatgaccagcttcgtatcgtggaaggcgacgcgttccagcgt
ctcgcgcgcatgctgaacggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acgaagatcgacctcccgtatctcgaagatctcgaccactatcactggttcgacatccgc
ctcgcggacgaagaagcggcagcgcagctggaagcgatcaaggactcgatcgagcagaag
cgtcatcagttcgacctcgcgttcgaagaaaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgccgtgaagcgtcgtctgcag
cctggcgacaagatggcgggccgtcacggtaacaagggtgtcgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggccgacgtcgtgctgaatccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctcggctggcgtatcggcgagatgctggagcgtcagacgaagatcgaggaactg
cgccagttcctgacgaagatctacaacgagtcgggccgcaaggaagagctggaaagcttc
tccgatgacgaaatcttcgaactcgcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgatggcgcgaccgaagaggaaatggggcgtgcgctcgatctggcgtatccg
gacaacatcgccacgaacctcggcatgaactcgtcgaagaatcaggttcagctgcacgat
ggtcgcaccggcgagccgtttgagcggaaggtcacggtcggttacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgactggtccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggaa
gtgtgggcgctcgaggcgtacggcgcgtcgtatgtgctgcaggaaatgctgacggtcaag
tcggacgacgtgacgggccggaccaaggtttatgagaacctggtcaagggcgatcacgtg
atcgacgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggt
attgatatcgatctggaccgcaactaa
DBGET
integrated database retrieval system
