Cognatishimia activa: HZ995_00150
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Entry
HZ995_00150 CDS
T07138
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cact
Cognatishimia activa
Pathway
cact02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cact00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HZ995_00150 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cact03021
]
HZ995_00150 (rpoD)
Transcription machinery [BR:
cact03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HZ995_00150 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
QTN35981
UniProt:
A0A975I8K6
LinkDB
All DBs
Position
complement(26221..28200)
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AA seq
659 aa
AA seq
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MAAKDNDDQKTDNENAEISLDMSQAAVKKMIAEARERGYITYDQLNQVLPPDQVSSEQIE
DVMSMLSEMGINIIEDDEVEEEEQKTTALVDTSSNTREVALGSGNQEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVI
DLEATFGNQMDEDGEEESVVDTSSAAKPEKKEVEQELDADGNPIQNDDDDDDDDQANMSL
AAMEAALKPRVLEMLDRIAEDYVMLSDMQDLRISATLNEDDSFSDKEEATYQKLRSEIVE
LVNELHLHNNRIEALIDQLYGINRRVMSIDSSMVKLADQARINRKEFIEAYRGRELDPNW
LDEMSQKPGRGWQMFMERSVGKVEELRGDMAQVGQYVGLDIPEFRRIVNQVQKGEKEARQ
AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV
RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPR
EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagataacgacgaccaaaagaccgacaacgaaaacgctgagatttccctg
gatatgagccaggctgcggtcaagaaaatgatcgctgaggcgcgggaacgtggctacatc
acctatgatcagctcaatcaggttctgccgcctgatcaggtgagttccgagcaaatcgaa
gacgtgatgtcgatgctgtccgagatgggcatcaacatcatcgaggacgatgaggtcgag
gaagaggaacaaaagaccaccgcgctggtcgatacctcgtccaatacccgcgaagtggcg
ctgggctctggcaatcaggaaaaactggaccgcaccgacgaccctgtccgcatgtatctg
cgtgagatgggctctgttgaactgctgtctcgcgaaggcgaaatcgcgattgcgaaacgc
atcgaggcgggtcgcaatacgatgatcgcagggctttgtgaaagcccgctgaccttccag
gcgatcaccatctggcgcgacgaacttctgtcggaagacatccttctgcgcgatgtcatc
gacctcgaggccacttttggcaatcagatggatgaagacggcgaagaggaaagtgtcgtc
gacacctcttcggcggcgaagcctgaaaagaaagaggtcgagcaagagctggatgccgac
ggcaatccaattcagaacgacgatgatgacgacgatgacgatcaggccaacatgtccttg
gccgcgatggaagccgctctgaagcctcgcgttcttgagatgctcgatcgcatcgctgaa
gactatgtgatgctctctgatatgcaggatctgcggatctcggcgaccttgaacgaggac
gacagcttctcggacaaagaagaggcgacctatcagaaactgcggtccgagatcgtggaa
ctggtgaacgagcttcacctgcacaacaaccgtatcgaagcgctgatcgaccagctttac
ggcattaaccgacgggtcatgtcgattgacagctcgatggtgaaactggccgaccaagcc
cgtatcaaccgtaaagaattcatcgaggcctatcgcggccgcgaactcgacccgaactgg
ctcgatgaaatgtctcaaaagccgggccgtggttggcagatgttcatggaacgctcagtc
ggcaaggtcgaagagctgcgcggtgacatggcacaagtcggtcaatatgtcggtctggat
atcccagaattccgccgcatcgtgaaccaagttcagaagggcgaaaaagaagcccgtcag
gccaagaaagaaatggtcgaagcgaaccttcgtctggttatttcgatcgccaagaaatac
acgaaccgcggcctgcaattccttgatcttattcaagaaggcaacatcggcctcatgaag
gcggtcgataaattcgaataccgtcgcggctataaattctcgacctatgcgacttggtgg
atccgtcaggcgatcactcggtctattgccgatcaggcgcgtacaatccgtattccggtc
catatgatcgagacgatcaacaagctggtgcggaccggccgtcagatgctgcacgagatc
ggtcgcgaaccaacaccagaggaactggcagaaaagctgcagatgcctttggaaaaggtc
cgcaaggtgatgaagatcgcgaaggaaccgatttcgctcgaaaccccgattggcgacgaa
gaggattcacagctcggcgatttcatcgaggacaagaatgcggtgctgcctctggacagc
gccattcaggagaacctcaaggaaaccacaacccgcgtgctggcgtccctcacgccgcgt
gaggaacgggttctgcggatgcgctttggcatcggcatgaacaccgaccacacgctcgaa
gaggttggccagcagttcagcgtgacccgcgagaggatccgtcagatcgaagcgaaagcc
ctgcggaaactcaagcacccaagccggagcaggaagctgcggagcttcctggaccagtag
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