Costertonia aggregata: HYG79_02360
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Entry
HYG79_02360 CDS
T06693
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cagg
Costertonia aggregata
Pathway
cagg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYG79_02360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cagg03021
]
HYG79_02360 (rpoB)
03400 DNA repair and recombination proteins [BR:
cagg03400
]
HYG79_02360 (rpoB)
Enzymes [BR:
cagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYG79_02360 (rpoB)
Transcription machinery [BR:
cagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYG79_02360 (rpoB)
DNA repair and recombination proteins [BR:
cagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYG79_02360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
QLG44236
UniProt:
A0A7H9ALA1
LinkDB
All DBs
Position
complement(515795..519604)
Genome browser
AA seq
1269 aa
AA seq
DB search
MFTNTTERISFASAKNIPNYPDFLDIQIKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINAVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSKAGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHIDEILDIDVKTILLHKENNA
QSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSPSVFAK
VNPMGFLETPYRKVDNGKVNTKEYVYLSAEEEEGMKISQANIPLKENGQIDTEKVIAREE
GDFPVVDPGEINYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQSPI
VGTGLERQVASDSRVLINAEGDGTIEYVDASKITIKYKRTDEEKLVSFEEDSKTYNLVKF
RKTNQGTSINLKPIVQKGDKVKKGQVLCEGYATEKGELALGRNLQVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEHGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR
SIKDKRKRSEDKDAINKLELEYEVKFQELKDVLVEKLFTLINGKTSQGVLNDLGEEVLPK
GKKYTMKMLNAVDDFAHLVGGSWTTDKDTNTMVADLLHNYKIKLNDLQGNLRRDKFTISV
GDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGLKLGKKYGTPIFDGATLDEINAYTDEAGIPRFGHTYL
YDGGTGQRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttcacaaacactactgaaagaataagttttgcatccgctaagaacatcccgaactat
ccggatttcttggacattcagattaaatcatttcaagatttttttcaacttgaaacaaaa
tctgacgaaaggggcaatgaaggtctttataataccttcatggaaaacttcccgattacc
gacacacgaaaccaatttgtattggagtttttggattactttattgatccgccaagatat
tccatacaagaatgtatagaaagaggtcttacctatagtgttccgctaaaagctaggtta
aaactatattgtacagatccggaacacgaggattttgaaaccatcgtacaggatgtttat
ttgggtaccattccttacatgacgcctagcggtacttttgtcatcaacggagcagagcgt
gttgttgtgtcgcaattgcaccgttcacctggcgtattttttggacagtcgttccacgca
aacggcacaaaactatattcagcaagggtaattccgttcaaagggtcttggatagaattt
gccacagatatcaacgctgtcatgtatgcctacattgacagaaagaaaaaattaccggtt
accacgcttttcagggctatcggttttgaaagggataaggatattttagagatttttgac
ctttctgaagaggtgaaggtttccaaagccggactcaaaaaagtattgggccgtaaatta
gcggccagggttttgaacacatggcacgaggactttgttgatgaggatacgggtgaagtg
gtttctatcgagagaaacgagatcgttttagatcgtgacaccgttctcgaaaaagagcat
atagacgaaatcttggacatagacgttaaaactatcctcttgcacaaagagaataatgcg
cagtccgattatgctatcattcataataccctgcaaaaagaccctaccaattctgaaaaa
gaagcggtagaacatatttacagacaactacgtaatgccgagccgccagatgaggaaact
gcacgcggtatcatagataaattgttcttttctgaccaacgttacaatttaggtgaggtt
gggcgttataggatgaataaaaaattacagttggatatcgggatggacaagcaggtcttg
accaaagaggatatcataacaatcatcaagtatttgatagagcttattaactccaaagca
gagattgatgatattgaccacctttccaaccgtcgtgtaagaacggtaggcgagcaattg
tcatctcagttcggtgttggtctggcccgtatggcaagaactattcgagagcgtatgaac
gttagggataatgaagtgtttacccctattgatttgatcaatgcgaagaccttatcttcc
gtaatcaactcgttctttggtacgaaccaactgtcgcagtttatggatcagacaaatcca
ttggcagaaataacgcataagcgtaggttgtcagcattggggcctggtgggctttcacgc
gaaagagctggttttgaggtgcgagatgttcattacacacactatggtagactttgtcct
attgaaaccccagagggaccaaacattggtttgatttcttcaccttcagtattcgccaaa
gtaaatccaatgggcttcttggaaaccccttatcgcaaggttgataatggcaaagtaaat
accaaggagtacgtttacttaagtgccgaggaagaggaagggatgaaaatttcgcaagcg
aatattcctcttaaggaaaatggacaaatagatacagaaaaggtaatcgctagggaagaa
ggtgattttccggtagtggatccgggtgaaatcaattatactgatgtagcacctaatcaa
attgcatcaatcagtgcgtctttgattccgttcttggagcatgatgatgcgaatagggcc
ttaatggggtcaaacatgatgcgacaagcggttcctttattgagaccgcaatcccccatt
gttggtactggtttggaaagacaagtagcttccgactccagggtattgataaatgcggaa
ggcgacggtaccattgaatatgttgatgccagtaagattaccattaaatataaacggacc
gatgaagagaaattggtaagttttgaagaagattccaaaacgtacaatctcgttaagttc
cgtaaaacaaatcaaggtacaagtatcaacctaaaacccattgttcaaaaaggtgataag
gtaaaaaaaggccaagtgctttgtgaaggttatgctactgaaaaaggagagttggcctta
ggtagaaaccttcaagtggcatttatgccttggaaaggatataactttgaggatgccatc
gtgatttctgaaaaagtagtccgtgaggatatattcacatcaatacatattgatgaatat
tctttggaagtgagagacactaaattaggagcggaagagttgaccaacgacataccaaac
gtatcagaagaggctaccaaagacttggatgagcatggcatgattcgtattggtgccgaa
gtaaaaccgggcgatatacttattggtaagattacgccaaaaggggaatccgatcctact
ccagaagaaaaattacttcgtgccatttttggtgataaagcaggtgatgtaaaagatgcc
tcattaaaagcttctccatcactcagaggtgtagtaatcgataaaaagctattctctcgt
tctatcaaagacaagcgtaaacgttctgaggataaagatgccatcaataaactggagctg
gaatatgaggtaaagtttcaggaattaaaagatgttctagtagaaaaactattcactctc
atcaatggtaaaacatcacaaggcgtattgaacgatctaggggaagaggttcttcctaaa
ggaaaaaaatacaccatgaaaatgttgaacgctgttgacgactttgcgcatttggtaggt
ggtagctggacaacggataaagacaccaataccatggtggccgatttgttgcacaattac
aaaatcaaattgaacgaccttcaaggtaacttgagaagggataagttcacaatttccgtt
ggtgatgaattacctgcaggtatcatgaaattggccaaggtatatgttgccaaaaaacgt
aaactcaaagtcggtgataaaatggcaggtcgtcacggtaacaagggtattgttgcacga
atagtccgtcaagaggatatgcctttcttggaagatgggacacctgtagatatcgtcttg
aatccgttaggtgtaccttcccgtatgaacattggtcaaatttatgaaaccgttttgggt
tgggcaggtcttaaattagggaaaaagtacggtactccaatttttgacggtgctacttta
gatgagataaatgcttacactgacgaggccggtatacctagatttggtcatacatatcta
tatgatggtggtacaggtcaacgttttgaccagcctgcaacggtaggtgtgatctacatg
ttaaaattggggcatatggtagatgataagatgcacgcccgttcaataggcccttactcc
ttgattacgcaacaacctctgggtggtaaagctcaatttggtggtcagcgtttcggagag
atggaagtttgggcactagaggcatatggggcatctgctacgttacgcgaaatccttacg
gtcaaatccgatgatgtgatcggtagagctaaaacatatgaaagtatcgttaaaggtgag
accatgccagaacctggtttaccagaatctttcaatgtactaatgcacgaacttaaaggt
ttaggtttggatattaggctggaagaataa
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integrated database retrieval system
