Clostridium autoethanogenum: CAETHG_1955
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Entry
CAETHG_1955 CDS
T02883
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cah
Clostridium autoethanogenum
Pathway
cah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAETHG_1955 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cah03021
]
CAETHG_1955 (rpoB)
03400 DNA repair and recombination proteins [BR:
cah03400
]
CAETHG_1955 (rpoB)
Enzymes [BR:
cah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAETHG_1955 (rpoB)
Transcription machinery [BR:
cah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAETHG_1955 (rpoB)
DNA repair and recombination proteins [BR:
cah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAETHG_1955 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF4369
Motif
Other DBs
NCBI-ProteinID:
AGY76174
UniProt:
A0ABM5NUL7
LinkDB
All DBs
Position
complement(2087453..2091181)
Genome browser
AA seq
1242 aa
AA seq
DB search
MVHPVQVGKRTRMSFSRLKEIGHMPNLIEVQLDSYNWFLKEGLQEVFDDINPIQDYTANL
NLEFVGYKLDMDNIKYSVEECKERDATYAAPLKVKVRLINKETGEVKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDLSVDKTGKNLFSSTVIPNRGAWLEYETDSNNVI
YVRIDKTRKLPITILIRAMGYGTDAEITNFFGEDERLKATIEKDNTKTHEEALLEIYKRL
RPGEPPTVDSAQSLIESLFFDAKRYDLSRVGRYKFNKKLSLHLRIANQIAAQDVVNPDTG
EILIQKGEKINREKAVEIQQCGINVVDIQIEDIVLRVIGNNFVDIRSFIDFDIDDLNIKE
SVHYPTLKKILDNYSDEESIKEQIRKNIHELIPKHIVRDDMYATISYELGLAYGVGHTDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYARVNQYGFIETPYRKVDKENKRVTNEIVYMTADEEDEYLIGRANEP
IDENGNFIDNKITVRDKEDVIVVPGQDVDYMDVSSRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAAVDSGVLPKARNAGVVSYVCANEVRVKRDSDGGT
DIYRLLKFQRSNQCTCINQRPIVEKGEVVKKGTVLADGPSTDLGEIALGKNIRMGFTTWE
GYNYEDAMLISEELVKKDVFTSIHLEEYESEARDTKLGPEEITRDIPNVGEDALKDIDER
GIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKVFTRENGDELSPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASKLGWHVATPVFDGATEEDILECLKKA
GYREDGKTILYDGRTGEEFNRPVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPES
FKVLIKELQALCLDVKVLNDNKEEIKLKESVDEEMEKLDVNIEGKEDSTDLPQEQNDDYN
TEQEENNDSENDSDEDLDLDYEDLTLDDLQSDLEIDDFNDEH
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaggttggtaaaagaacaagaatgagcttttccagacttaaagaa
ataggccacatgcctaatttaattgaggttcagctagattcctacaattggtttttgaaa
gaaggattacaagaggtatttgatgatattaatcctattcaagattatactgctaacctt
aatttggaatttgtaggatataagttagatatggataatatcaaatattctgtagaggaa
tgtaaagaaagagatgcaacttacgcagcacctttaaaagtaaaagtaaggctaattaac
aaagaaactggtgaagttaaagagcaagaagtttttatgggagatttccctcttatgacg
gagcaaggaacctttataattaatggtgcagagagagttatagttagccaacttgtaaga
tcaccaggtgtatattatgatctttcagttgataaaacaggaaaaaatcttttttcttca
actgtaatacctaatagaggagcttggctagaatatgaaactgactctaacaatgtaata
tacgttagaatagataaaactagaaagttacccataactattcttattagagccatgggt
tatggtacagacgcagaaattactaatttctttggagaggatgaaaggctaaaagccaca
attgaaaaagataatacaaagactcatgaagaggctttgcttgaaatatataaaaggtta
cgaccgggagaacctcctacagtggatagtgcccaatcactaattgaatctttatttttt
gatgcgaaaagatatgatctttcaagagttggaagatacaaattcaataagaagttatca
ttacacctaagaattgctaatcagatagcagcacaggatgtagttaatccagatacagga
gaaattcttatccaaaaaggtgaaaagataaatagagaaaaggcagtagaaatccaacag
tgtggaataaatgtagtagatatccaaattgaagatatagttttaagagttataggtaat
aactttgtagacatacgtagttttattgactttgatatagatgatttaaatataaaagaa
agtgttcattatcccactttaaagaaaattttagataattatagtgatgaggaaagtatt
aaggaacaaataagaaagaacatccatgaattaattccaaaacatatagttagagatgat
atgtatgctaccattagctatgagttgggattagcatatggagtaggtcatactgatgac
atagaccatcttggaaatagaagacttagatctgttggtgaattacttcaaaatcaattt
agaataggtctctcaagaatggagagagtggttaaggaaagaatgaccatacaggatcag
gaagttataacacctcaagctcttataaatataagaccagtagctgcgtctataaaagag
ttttttggaagttctcaactttctcaattcatggatcaaactaatccattgtcagagctt
acccataagaggagactatctgctttaggaccaggcggactttcaagagaaagagctgga
tttgaagtcagggatgttcatcactcacattatggaagaatgtgtccaatagagacgcca
gaaggacctaacataggacttattaactctctagctacatatgcaagagttaatcaatat
ggctttatagaaacgccttatagaaaagtagataaagaaaataagagagttacaaatgaa
attgtatatatgacagcagacgaggaagatgaatatttaataggtagggcaaacgagcct
attgatgaaaatggtaattttatagataataaaattacagttagagataaagaagatgtt
attgtagtacctggtcaagacgttgattatatggatgtgtcttcaaggcaattagtttct
gtagctacagctatgataccattccttgaaaatgatgatgccagccgtgcacttatggga
tcaaatatgcaaaggcaggcagttccacttttgaaaccacaagcacctattgtaggaaca
ggtattgaatacaaggctgcagtagattcaggagtacttcctaaagctagaaatgcaggc
gttgtctcttatgtatgtgctaacgaagtaagggttaagagagactcagatggaggaaca
gatatttatagacttcttaagttccagagatctaaccaatgcacatgcatcaatcaaaga
cctatagttgaaaaaggggaagtagttaaaaagggaacagttttagcagatggaccttct
acagatcttggagaaatagcacttggaaaaaatattagaatgggatttacaacttgggaa
ggatataattatgaagacgcaatgcttatatctgaagagttagtaaaaaaagatgtattt
acatcaatacatctagaggaatacgaatctgaggctagagatacaaaattaggaccagag
gaaattacaagagatataccaaatgtaggagaagatgcattaaaggatatagatgaaaga
ggaattataagaataggtgcagaagttagagcaggagatatattagtaggtaaagtaaca
cctaagggggaaactgaacttacagcagaagaaaggcttttaagagcaatatttggcgaa
aaggccagagaagttagagatacgtcccttagagtaccacatggtgaagcgggcataatt
gtagatgtaaaagtatttacaagagaaaatggagatgagctttcaccaggagttaacaaa
ttagttagatgttatatagctcagaagagaaagatatctgtaggagataaaatggcagga
agacacggaaataaaggtgttatttctagagtactaccagaggaagatatgcctttccta
ccagatggaagacctcttcagatatgcttaaatccacttggtgtaccttcacgtatgaat
ataggtcaggtattagaagttcatttaggatgggctgccagtaaattaggatggcatgta
gcgactccagtatttgatggagccacagaagaagatatattggaatgcttgaaaaaagca
gggtatagagaagacggaaaaacaatactatatgatggtagaacaggagaagaatttaat
aggcctgtaactgtaggatatatgtatatcttaaaattagcacatttggttgacgataag
atccatgcaagatctacaggaccatattcgttagtaactcaacagccattgggtggtaaa
gctcaatttggtggccaaagatttggtgaaatggaagtttgggcattagaggcatatgga
gcagctcatacacttcaggaaatattgacagttaagtcagacgatgtagttggaagagtt
aaaacttatgaagctattgtaaaaggtgaaaatataccagaaccgggaattccagaatca
tttaaggttctgataaaggaacttcaagctttatgcttggatgtaaaagtattaaatgat
aataaagaggaaatcaaacttaaagagtctgtggacgaagagatggaaaaactagatgta
aatattgaaggaaaagaagattctactgatttacctcaagaacaaaatgatgactataat
actgagcaagaagaaaacaatgatagtgaaaatgacagcgatgaagatcttgatttagat
tatgaagatcttactttagatgatttgcagagtgatttagaaatagatgattttaatgat
gaacattag
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