Caloramator sp. E03: FDN13_09030
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Entry
FDN13_09030 CDS
T05994
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cale
Caloramator sp. E03
Pathway
cale03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDN13_09030 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cale03021
]
FDN13_09030 (rpoB)
03400 DNA repair and recombination proteins [BR:
cale03400
]
FDN13_09030 (rpoB)
Enzymes [BR:
cale01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDN13_09030 (rpoB)
Transcription machinery [BR:
cale03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDN13_09030 (rpoB)
DNA repair and recombination proteins [BR:
cale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDN13_09030 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QCX33827
LinkDB
All DBs
Position
1834413..1838141
Genome browser
AA seq
1242 aa
AA seq
DB search
MVHPVKVGRRERMSFSKIKEVIDMPNLIEVQLDSYKWFLEEGLKEVFDDVNPITDYTGNL
ILEFIDYKLDYDNIKYSVEECKERDATYAAPLKVKVRLVNKETGEVKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGAYYAEAIDKSGKKLYSSTLIPNRGAWIEYETDSNDVI
YVRIDRTRKLPLTVFIRALGFGVDYEILQFFGEEDHLKATLERDNTKTVEEGLLEIYKRL
RPGEPPTVESATTLIEGLFFDPKRYDLSRVGRYKFNKKLALANRIAGQIAADTIANPITG
EIFVEAGQKIDRDTAVKIQNAGINIVDVIVEGKNIRVIGNNFVDIHKLGLPYDLSDLNIK
EMVHYPTLKAILDEFSNEDDIKDAIRQRINQLIPKHIIKDDIYASISYCMGLFYGIGYVD
DIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDLDVATPQALINIRPVAAAIK
EFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHISHYGRMCPIET
PEGPNIGLINSLATYAKVNEYGFIEAPYRVVDKKNGIVTDKVLYLTADEEDQYIIAQANE
PVDENGKFIDKRVTARAKEEIVVVSPEEVDLMDVSSKQIVSVATAMIPFLENDDANRALM
GSNMQRQAVPLIKPEAPIVGTGIEHKAAKDSGIIPIAKNDGTVVKVAGDIIQIRRDEDGR
IDTYKLLKFKRSNQGTCINQRPIVNEGDRVKKGDIIADGPSIDQGEIALGRNILIGFMTW
EGYNYEDAILISEQLVMDDVFTSIHIEEYECEARDTKLGPEEITRDIPNVGEDALRDLDE
RGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGI
IVDVKIFTRENGDELPPGVNELVRVYIAQKRKISVGDKMAGRHGNKGVISRVLPVEDMPF
MPDGRPLQIVLNPLGVPSRMNIGQVLEVHLGLAASRLGWHVATPVFDGATEDDIQECLKM
AGVEPDGKMLLFDGRTGEAFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGG
KAQFGGQRFGEMEVWAIEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPE
SFKVLIKELQSLCLDVKVLTDDKKEIMIKEDIEDDLDDIEATMEGRDMLPLPTVPEAEEI
EQYDDILEDEEEEINIEDLADMDVEPDFEEGLEEFDDFDDKE
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgttaaggtcggcaggagagaacgaatgagtttctccaaaatcaaagaa
gtaatcgacatgccaaatcttattgaggtccaacttgattcctacaaatggttcttagaa
gaaggtcttaaagaagtttttgatgacgttaatccaattacagattatacagggaacctc
attctcgagtttattgactacaagcttgattatgataatataaaatattcagtagaagaa
tgtaaagaaagagatgcaacttatgctgcacctcttaaagttaaagtaagacttgtaaat
aaggaaacaggagaggttaaggaacaagaagttttcatgggtgacttccctcttatgaca
gagcagggtacatttataataaatggagcagagagagtaatagttagccagcttgttaga
tctcctggagcatattatgcagaggcaattgataaatcaggaaagaagctttattcatca
actttaattcctaatagaggggcttggattgaatatgaaacggattcaaatgatgtaatc
tatgttagaattgatagaacaagaaaattgcctcttactgtttttataagggcattaggc
tttggtgttgattatgaaatccttcagttttttggtgaagaggatcatttaaaggctact
ttagagagagataatacaaaaaccgtcgaggaaggtcttttagaaatatataaaagatta
agaccgggtgagccgccaacggttgaaagtgctacaacccttattgaaggtctgtttttt
gatcctaaaagatacgatttgtcaagagttggaagatataaattcaataaaaaattagca
ttagctaatagaattgcaggacagattgcagcagatactattgctaatcccattacaggg
gaaatatttgttgaagcaggacaaaaaattgatagagatactgcagtaaagatccaaaat
gccggtataaacattgttgatgttattgttgaaggcaaaaatataagggtaataggtaac
aactttgttgatatacataagcttggtttaccttatgatttatctgatcttaatataaaa
gaaatggtacattatcccacattgaaagctattcttgatgaattttcaaatgaagatgat
attaaagatgcaataagacaaagaataaatcagcttataccaaaacatattataaaagac
gatatatatgcatctataagttattgtatgggcttgttttatggaattggctatgtagac
gatattgatcatcttggaaatagaagattaaggtctgttggtgagctcttacaaaatcaa
tttagaataggtctttcaagaatggagagagttgttaaagagagaatgaccatacaggat
ctcgatgttgctactccacaagcacttattaatataagaccagttgcggctgcaattaaa
gagttttttggaagttcgcagctctcccagtttatggaccagactaatccactatcagag
cttacacataagagaagattgtctgctcttggacctggaggactttcaagagaaagagca
ggtttcgaagttagagacgttcatatatcccattatggtagaatgtgtccaatagaaact
ccagaaggaccaaatataggtcttataaactcccttgcaacttatgcaaaggtaaatgaa
tacggatttattgaggcaccttacagagtagttgataagaaaaatggaattgttacagat
aaagtattatatcttactgcagatgaagaagatcaatatattattgcacaggcaaatgaa
cctgttgatgaaaacggaaagtttattgataaaagagttacagcaagagcaaaggaagaa
atagttgttgtttcaccagaagaagttgaccttatggatgtatcatcaaaacaaatagtt
tctgttgcaactgctatgattccattccttgaaaatgatgatgctaaccgtgctttaatg
ggttcaaacatgcagcgtcaggctgttcctcttataaaacctgaagctccaatagttgga
acaggtatagagcataaggctgcaaaggattcaggtataattccaattgcaaaaaatgat
ggtacagttgtaaaagttgctggagatataatacagataagacgagatgaagatggtaga
atagatacttataaacttttaaagtttaaacgttcaaaccaaggaacttgtattaatcaa
agacctattgtaaatgaaggagatagagttaaaaagggagacataatagctgatggtcca
tcaattgaccaaggagaaattgcacttggtagaaacatattaataggttttatgacttgg
gaaggttataattacgaggatgctattttaatatcagagcagcttgtgatggacgatgtg
tttacatctattcatatagaagaatatgaatgtgaagcaagagacacaaagcttggtcca
gaagagataacgagagatattcctaatgttggtgaagatgcacttagagatcttgatgaa
agaggtattataaggataggtgcagaagttagggcaggagatatacttgtcggtaaggtt
actcctaaaggagaaactgagcttactgctgaagaaaggcttttaagagcgatatttgga
gaaaaagcaagggaagttagagatacatctcttagagttcctcatggagaagcaggaata
atagttgatgttaagatatttacaagagaaaatggcgatgaattgcctccaggggttaat
gaacttgtaagagtttatattgctcaaaaaagaaaaatatctgtaggagataagatggca
ggtcgtcatggaaataagggtgttatctcaagagtgcttccagttgaagatatgcctttc
atgccagatggaagacctcttcagatagttttaaatcctcttggtgttccgtcacgtatg
aatataggtcaggttttagaggtacatcttggtcttgctgcaagcaggcttggatggcat
gttgcaacacctgtatttgatggcgcaacagaggatgatatacaagaatgtttaaagatg
gcaggagtagaaccagatggtaagatgcttctctttgatggaagaactggtgaagctttt
gataatagagttactgttggatatatgtatatattaaaacttgcacatcttgttgacgat
aagatacatgcaagatctacaggtccatactcccttgtaacccagcagcctcttggtggt
aaagcacaatttggaggtcaaaggtttggagaaatggaagtttgggcaattgaagcttat
ggtgcagcttatactcttcaagagatattaacagttaagtctgatgatgttgtaggacgt
gttaaaacttatgaggctattgttaaaggtgaaaatattccagagcctggagttccagaa
tcctttaaggtgcttattaaagagcttcagtccctctgccttgatgtaaaagttttaact
gatgataagaaggaaataatgattaaagaagatattgaggatgatcttgatgatatagag
gcaactatggaaggaagggatatgttaccacttccaactgttcctgaagcagaagaaatt
gaacagtatgacgatatattagaggatgaggaagaagaaattaatatcgaagacctcgct
gatatggatgtagaaccggattttgaagagggattggaagagtttgatgattttgatgat
aaagaataa
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