Calothrix sp. 336/3: IJ00_15215
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Entry
IJ00_15215 CDS
T03937
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IJ00_15215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_15215
Enzymes [BR:
calh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IJ00_15215
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IJ00_15215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKG22438
UniProt:
A0A0T7BTL8
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All DBs
Position
complement(3621276..3624773)
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AA seq
1165 aa
AA seq
DB search
MAFSSLVRALGKSSLTHELISKLDKQGEVCINGAPRLPKGLVASAIAQTSQRNILLVCAT
LEEAGRWTAQLETMGWNSIYFYPTSEASPYEPFDPETEMVWGQMQVLADLVKENHQEKQS
VKLAIVTTHAALQTHLPPPGVFKPFCITLRKGMELDLDGFGVKMAQLGYERVPLVETEGQ
WSRRGDIVDVFPVSSELPVRLEWFGDEVEQIREFDPATQRSALDKIEQLILTPTSFAPII
SQAFQGEQLETITGFISDTEQEQLAANQFLEGSRRFLGLAFEQPASLMDYLPENTLIAID
EVEQCTAHSDRWTENAESQWQLVTANLPQQLPKTHRYFADSLKATTGFKKLYLSELAETS
LSASHNGLNLASRPVPVTPHAYAKMAEALRQERDRHFGIWLISAQPSRSVSLLQEHDCPA
QFIPNPRDYQAIEKLHINHTPIALKYSGLAELEGFILPTFRVVVVTDREFYGQHSLATFS
YIRKRRKAASKQVDANKLRPGDFVVHRNHGVGKFLKLESLTINNEIREYLVVQYADGLLR
VAADQVNALSRFRTTTEKPPELNKMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQSG
FAYPGDTPWQEEMEGSFPYQATTDQLKATQDVKRDMESDRPMDRLVCGDVGFGKTEVAIR
AIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPINVGLLNRFRTAEERRGIQKRLA
TGELDVVVGTHQLLGKGVNFRDLGLLVIDEEQRFGVNQKERIKTLKTQLDVLTLSATPIP
RTLYMSLSGIREMSLITTPPPSRRPIQTHLSPMNPENIRSAIRQELDRGGQVFYVVPRVG
GIEEVAEKIREMIPGARIAIAHGQMEEAELESTMLTFSNGEADILVCTTIIESGLDIPRV
NTILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSTLSDAARQRLRAIQEFTQLG
SGYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPQVDDTQID
LNLTAFIPADYIPDIDQKVSAYRAVAAANSQEELQQIAAEWTDRYGNIPTPATQLLRVME
LKQLGKKLGFSRIKPESKQHIILETPMEEPAWSLLAGNLPESLRNRFVYSPGKVTVRGLA
VLKAEQQLNTLIDAFTKIREIPNLN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcttcccttgtccgcgctttaggtaaatcctccctcacccatgaattaatc
tccaaattggataaacagggagaggtatgtataaatggtgcgccacgtcttcccaaaggt
ttggtggcttcggcgatcgctcaaacctcccagaggaatattttactagtatgtgcaact
ttagaggaagctggtcggtggacagcacagctagaaactatggggtggaatagtatttat
ttttaccccacctctgaagcttctccctacgaaccttttgaccccgaaactgagatggta
tggggacagatgcaggttttggcagatttggtgaaggaaaatcaccaggaaaagcagtct
gtgaagctggcgatcgtcactacccatgcagcattacaaacccatttaccgcccccagga
gtatttaaacctttttgcatcaccctgagaaagggaatggaattggatttggatggattt
ggggtgaaaatggcacaattgggctatgagcgggttcctttggtggagacggaggggcaa
tggagtcgccgaggtgatattgtggatgtgttcccagtatcttcggaactgcctgtcagg
ttagagtggtttggagatgaggtggaacagatacgggagtttgaccctgccacccaacgt
tctgccctagataaaattgagcagttaattttgactcccactagctttgctcccataatt
agtcaggctttccagggagaacaactagagacaattacaggttttatttctgatacagaa
caggaacaactggcagccaatcaatttttagaaggaagtcggagatttttgggtttagct
tttgagcaacccgcttccttaatggattatttaccagaaaataccctcatagccattgat
gaggttgagcaatgtactgcccatagcgatcgctggacggaaaatgctgagtcccaatgg
caactagtgacggcaaatttacctcagcaattaccgaagactcaccgctactttgccgat
tctctgaaggcaaccacaggatttaaaaaactttatctctcggaactcgcagaaacatct
ttatccgctagtcacaacggattaaatcttgccagtcgtcccgtacctgtgacaccccat
gcctatgcgaaaatggcagaagctttaagacaggagcgcgatcgccactttggtatctgg
ttaatttcagcacaaccgtcccgctctgtatccctactccaagaacacgactgtccggca
caatttattcccaacccccgcgattaccaagcgattgaaaaattacacatcaatcatacc
cccattgctctcaaatattccggtttagctgaattagaagggtttattctcccgactttc
cgtgtcgtggtggtgacagacagggaattttacgggcagcattctctggcaacctttagt
tatattcgcaaacgtcgcaaagctgcttctaaacaggttgatgccaataaattacgtccc
ggcgactttgtagtgcatcgcaaccatggtgtcggtaaattcctcaagttggaaagtcta
acgattaacaacgaaatccgtgagtatttggtggtgcaatatgctgatggattattgcgg
gtggcagctgatcaggtgaatgccttatctcgcttccgcaccaccactgaaaagccccca
gaattaaacaaaatgacggggaaagcttgggaaaataccaaaaataaggttcgcaaagcc
attaaaaagttggcagtggacttgttgaaattatacgctgctcgctcacagcaatcgggt
tttgcctatcctggagatactccgtggcaagaggaaatggaaggttccttcccctatcaa
gcaacgacagatcaattgaaagcaacccaggatgtcaaacgggatatggagagcgatcgc
cctatggatcgtctagtctgtggggatgtgggtttcggaaagacagaggtggcaattcgg
gcaatttttaaagcagtcaccgcaggtaaacaggttgcactcctggctcccacaacgatt
ttaacccagcaacattaccatactctcaaggaacgttttgccccctacccgattaatgtg
ggtttactcaatcgttttcgcaccgcagaggagcgtcgtgggattcagaaacgtttggca
acgggggagttagatgtggtggtgggaactcaccaacttttaggtaagggtgtgaacttc
cgcgatttaggattattggtaattgatgaggagcaacgctttggggtgaatcagaaggaa
aggattaaaaccctgaaaactcaattggatgtgttgacactttccgcgacaccgattccc
cgtaccttatatatgtctctctctggaattcgggaaatgagtttaattacgactccaccc
ccttcccgtcgtccgattcaaacccacctttcacccatgaatccggaaaatattcgcagt
gccatccgccaagaattagaccgaggtgggcaggtattttacgtagttccacgggtggga
ggaattgaagaggtagccgaaaaaatccgagaaatgattccaggagcaagaatagcgatc
gcccacgggcaaatggaggaagcggagctggaatctaccatgctcacctttagtaatggg
gaagcagatatccttgtttgtactaccatcattgaatctggattagatattcccagggta
aatacaattctgattgaagatgctcaacgctttggtttatcccaactctaccaattacgg
ggacgggtaggacgtgccggcattcaggctcacgcttggctattttaccccaaacaatct
accctatctgatgctgcaaggcaacgtctccgggcaattcaagaatttactcagttgggt
tctgggtatcaattagcgatgcgagatatggaaatacgcggagtcggcaacctcttggga
gcagagcagtcgggacaaatggatgtaatcggtttcgatttatacatggaaatgttggaa
gaagcgattcgagaaatccgagggcaagaaataccccaggttgatgatacacagattgac
ttgaatctgacagcctttatccctgccgattatattcccgatatcgaccaaaaggtgagt
gcataccgtgcagtcgcagcagctaattcccaggaggagctacagcaaattgctgcggaa
tggacagatagatatggcaatattcctacccccgcaactcaattattacgggttatggaa
ttaaaacaactgggcaaaaagctgggtttcagtcgcatcaaaccggaaagtaagcaacac
atcatcctggaaacacccatggaagaaccagcatggagtcttctggcaggaaatttacct
gaaagtctgcgtaacaggtttgtttattctccagggaaggtgacagttcggggattagct
gtgttaaaggcagaacaacaattaaatactttaattgatgcttttaccaaaatacgagaa
attcccaatctcaattaa
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