Calothrix sp. PCC 7507: Cal7507_5012
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Entry
Cal7507_5012 CDS
T02358
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calo
Calothrix sp. PCC 7507
Pathway
calo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal7507_5012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calo03019
]
Cal7507_5012
03400 DNA repair and recombination proteins [BR:
calo03400
]
Cal7507_5012
Enzymes [BR:
calo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cal7507_5012
Messenger RNA biogenesis [BR:
calo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cal7507_5012
DNA repair and recombination proteins [BR:
calo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cal7507_5012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_11
RPA_C
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
AFY35361
LinkDB
All DBs
Position
5687124..5689223
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AA seq
699 aa
AA seq
DB search
MVTQLKEKALLLLRQALDNSTADFRPGQWEAIEELLLNKSRLLVVQRTGWGKSLVYFLAT
RLLRDQSVGCTLLISPLLALMRNQIVAAQRIGIKAETINSSNTEEWEVVKTQLLADKIDI
LLISPERLANEEFREKILLPLSQCIGLFVVDEAHCISDWGHDFRPDYRRIVRILQGLPQN
IPVLTTTATANNRVVDDIKAQLGSNLRVSRGSLTRQSLQLQNIYLPSPAARMAWLAEQLP
KLPGSGIIYTLTVRDADRVADWLQIQGINAKAYHSNLDSEMRVVLEDELLKNEIKALVAT
TALGMGFDKPDLGFVIHYQRPGSVVHYYQQVGRAGRAVDIAYGILLGGDEDEEITNYFIN
TAFPPQIHTQQILTVLNQSREGLSVPQLEQSLNLSRGQIDKVLKQLSLESPAPITKLDSK
WYATPVNYFPDSEKIERLTQIRRQEQAKMSEYMQNKQCLMAFLAAELDDPNPTACGKCAV
CLGRHLLPETCSMEIINQAILYLRRSDQIIEPRKQWPQQALLNYGFSGNIRSNLRAEAGR
ALSLWGDAGWGELVKQGKYRDNHFDDVLVQGTVEMIQRWQPQPFPSWITCVPSLNRPELV
PNFAQRLAKKLGLPFKLIVRKTRPTQLQKNMSNSYQQAHNLDDAFAIEVWEEMSSSVFLV
DDMVDSRWTFTIIAALLRRAGSGLVFPIALALNTLGQGD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggtaactcaactcaaagaaaaggcgttattgcttcttcgtcaggcgcttgataattca
acagctgattttcgtcctggacaatgggaagctattgaagagttactcttaaacaaatcg
cgtttacttgtcgttcaacgcacaggttggggcaaaagtttagtatattttttagcaact
cgactactacgagatcaaagtgttggttgtactcttttgatttcaccactactagctttg
atgcgaaaccaaattgtagcagcacaacgcattggcatcaaagctgagacaattaactct
agcaatacagaagagtgggaagttgtcaaaacccaattacttgcggataaaatagacatc
ctattaatttcacccgaaagactagctaacgaagaatttcgagagaaaattcttttacca
ttatcccaatgtataggtttatttgttgttgatgaagctcattgtatttctgattgggga
catgattttcgccctgattatcggcggattgtgagaattttacaaggactaccacaaaat
atcccagttctgactacaacggcaacagctaacaatcgagtagttgatgatattaaagct
cagttggggtcaaatctgcgagtttctagaggtagcttaaccagacaaagtttgcagtta
caaaatatttatcttcccagtccagcagcgagaatggcatggttagcagaacaattgcca
aaattacctggaagtggaataatttacacattaactgtcagggatgctgaccgagtagct
gattggttacaaattcaagggattaatgctaaagcataccacagcaatttagatagtgag
atgcgtgtagtattagaagacgaacttctcaaaaatgaaattaaagcattagttgcaact
acagcattaggtatgggttttgataaacccgatttaggctttgtgattcattatcaacgc
cctggttctgttgtacactattatcagcaagtaggacgagcaggtagagcagtagacata
gcttatggaattcttctcggtggtgatgaagatgaggaaattactaactatttcattaat
acggcttttcctccccaaatacatacccagcaaattttaactgtcctcaaccaatctaga
gaaggtctttctgtacctcagttggaacaaagtctcaatctttctagaggtcaaattgat
aaggttttaaaacagctttccttggaatcgccagcacccataactaagctagattctaaa
tggtatgctacaccagtaaattattttcctgatagtgaaaaaatagagcgattaacacaa
attcgccgccaagaacaagccaaaatgtcagaatatatgcaaaacaaacaatgcttgatg
gcttttttggcagcagaattagacgatcccaatccgactgcttgcggtaaatgtgctgtt
tgtttaggtagacatttattgccagaaacctgctcaatggagattataaatcaggcaatt
ttatatctacgtcgcagtgaccaaattattgaaccacgtaaacaatggccacagcaagcc
ttgcttaattatggattttcgggtaatatccgcagcaatttaagagcagaagcaggtaga
gcattatctctatggggtgatgctgggtggggagaattagtaaaacagggtaaatataga
gataatcattttgatgatgtactagtacagggtactgtagaaatgattcaacgttggcaa
ccacagccttttcctagttggataacctgtgttccttctttgaatcgtcctgaacttgtc
ccgaattttgcacaaagactggcaaaaaaattaggcttaccctttaagctaattgtccgg
aaaactcgcccaactcagttacaaaaaaatatgagtaatagttatcaacaagctcataat
ttagatgatgcttttgcaatcgaagtatgggaagaaatgagcagttctgtattcttagtt
gatgatatggtagattcccgttggacttttactataattgcagcacttttgcgtcgtgct
ggtagtgggttagtttttcctatagcattggcactcaatacattaggtcaaggagattag
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