Cicer arietinum (chickpea): 101514208
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Entry
101514208 CDS
T02819
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101514208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101514208
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
101514208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_14
TPR_8
TPR_19
TPR_12
TPR_9
TPR_17
ARM_TT21_C
TPR_7
TPR_10
BTAD
Motif
Other DBs
NCBI-GeneID:
101514208
NCBI-ProteinID:
XP_004511280
UniProt:
A0A1S2YWZ4
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All DBs
Position
8:111281..135672
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AA seq
1183 aa
AA seq
DB search
MASETNTDEEHLFRRLQDSPDDASLHFDIGLFLWKKGGERQEAKDKAAQHFILSAKLNPK
NGESFKYLGHYYGRVSLDTQRALKCYHRAVAINPDDSDSGEALCDLLDQGGKDTLEVAVC
LEASKMSPRAFWAFRRLGFLLVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLGR
FTAAVKSYGRAIELDNKMVFALVESGNISLTLGQFKKGIEQFQQALEISPDCVPAQYGLA
LGLLCSAKDCINLGAYQWGASLLEEASEVARESACSFRNISCLWKLYADIQLAYARCNPW
IEEVQKLESNKEAFSASIISWRKTCFLAARRARFSYQRALHLSPWQANIYTDIAVISDLI
TSLSNNYKQDLNARQLAEKMSIGALLLEGDNYEFWVALGCLSDHNALNQHALIRGLQLNV
SLAAAWGYLGKLYCKKGEKQLARQVFDRARSIDPGLALPWASMSAESCVSREVAQGEAFE
SCSRAVQILPLAEFQVGLAKLALLSGHISSSQVFGAIQQAVQHSPDSPESHNLHGLVCEA
RKDYKSAATFYRLARHAFSIGSQSIRNSHIRDISINLARSLSKAGNAADALQECENLKKE
GALDEEGLHVYAFSLWQHGENDLALSVARSLAESLSSMKKTFVAASICFISRLVYFICGL
DAVITSIVKIPEELFQSSKVSFVMSAINALDGQNRLGLVVSSTRNFLKSQEEISRMHILI
ALGKLVKNKSDCCLDIKSGIVYLRKALHMFPNCNLIRNLLGYLLLFYEELNNCHVATRCC
KLDHPDLSDQEGLKSAYDIYGAGAVACYAACDATDNITKFTFPTCSKKCSGHPRAIKFLQ
KYIHQKPWNHDARYLLVLNYLQKAREQKFPHHLCGILNRLIQAALSNELHSKTEMKYQYR
HFQLLLCASEISLQCGIHMSCITHAKKASQLVLPDGYLFFAHLLLCRLYSMKDDHLNFMK
EYSKCLELRTDSHIGWICLKLMECQYELQIDSNAIDLNFEKCIRRDGSSWNMWMAVYNLV
RGMNWLQKSDLVSAEQFMAEACSLAGFESCLFLCHGAICMELVRQCSDPQYLSRAVESLT
KVQELSLIPLPFASILLAQAEGSLGSKGRWDRNLRLEWYNWPSEMRPAEVYFQMHLLARQ
LKLGPNTISSMESSESPQRWVIRAIHINPSCMRYWRVLQKLME
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgaaacgaatacagatgaagaacatctcttccgacgcttgcaggattcccca
gacgacgcctctctacattttgatattggtttattcttatggaaaaaaggaggagaacgc
caagaagccaaggacaaagctgctcaacattttattctatccgccaaattgaaccctaaa
aatggagaatctttcaaatatctcggccattattatggacgcgtttcccttgatactcag
agagcccttaagtgttatcaccgagccgtcgctatcaaccccgatgattccgattctggg
gaagccctgtgtgatttacttgaccaaggaggaaaggacactttggaggtcgcagtatgc
cttgaagcttctaaaatgtcaccgcgggctttctgggctttccgcagattgggtttcctt
ctggttcatcaaaagaaatggtccgaagctgttcagagtcttcaacatgccatacgaggc
tatcctacttgtgctgacttgtgggaagctttgggccttgcatatcagcggctgggcagg
tttactgcagctgtaaagtcttatggccgagcaatcgagttggataataagatggtcttt
gctttggttgaaagtggaaatatctctttgacacttggtcaatttaaaaagggcattgaa
caatttcaacaagctttggagatttcaccagattgtgtgcctgcacaatatggacttgct
ttggggctgctttgttcggcgaaagattgcattaacttaggagcctatcagtggggagct
tctctgttagaggaagcatccgaggtggcaagggagagtgcttgttctttcaggaatatc
tcatgtttgtggaaattatacgcagatattcagcttgcatatgcaagatgtaatccttgg
attgaggaggttcaaaagttggaatctaataaggaagccttcagtgcttctatcatttca
tggaggaagacctgctttttggctgcaagacgtgctaggttttcgtaccaacgagcctta
cacttgtctccatggcaagcaaacatctatactgacattgcagtaatctctgatcttatt
acctcattgagcaataattacaaacaagacttaaatgcacggcagctagcagaaaagatg
tctattggtgccttgctacttgagggtgacaattatgagttctgggtggcattagggtgc
ttgtctgatcataatgcactaaatcaacatgctttgatcagaggactgcagttaaatgta
tctctagctgctgcttggggatatcttgggaagttgtattgtaaaaagggtgaaaaacaa
ttggcaagacaagtgtttgaccgtgctagaagtatcgatcctggccttgcattaccgtgg
gcaagcatgtcagccgagtcttgcgtgagtagggaggttgcacaaggtgaggcatttgaa
agctgttcccgagccgtgcagatattgcctttagctgaattccaagttgggctagctaag
cttgctctgctgagtggtcatatttcatcttcacaggtttttggagctattcagcaagct
gtgcagcattctcctgattcccctgaatcccataacttacatgggctggtttgtgaggct
cgaaaggattacaagtctgctgctacattttataggttagcacgtcatgcatttagcatt
ggttcacagagtattcgaaactcgcatatcagggatatttctatcaatttggctagatcg
ctttccaaggctgggaatgctgctgatgctttgcaggaatgtgaaaatttgaagaaagaa
ggggcgcttgatgaagaaggtttgcatgtatatgctttctcgttatggcaacatggtgaa
aatgatttggctctctctgtagctaggagtcttgctgaaagtctttcttcgatgaaaaaa
acatttgttgcggcatctatttgtttcatcagtagattagtgtacttcatatgtggacta
gatgcagttatcactagcattgtgaagataccagaggagctatttcagagttcaaaagtt
agttttgttatgtcagctatcaatgctcttgatggacaaaatcgtcttggattggttgtt
tcaagtactcgaaatttcctcaaatctcaagaagaaatttctaggatgcacattttaata
gcacttgggaaactggtgaaaaataaatctgattgctgccttgacattaaaagtggaatt
gtctacctcaggaaagcactgcacatgttccctaactgtaatttgataaggaaccttctt
ggctatctcttgctattctatgaagagttaaataattgccatgtggcaactaggtgttgt
aaactggaccatcctgatttgtctgatcaagaaggtttaaaatcagcttatgatatttat
ggtgctggagcagttgcttgctatgccgcttgcgatgccactgacaacattacaaagttt
acttttccaacttgttcaaagaagtgttctggtcatccacgggctatcaaattcctacag
aaatacattcatcagaaaccatggaatcatgatgcccgctacttgcttgttcttaactat
cttcagaaagcacgtgaacaaaaatttcctcatcatctctgcggtatactaaatcgtcta
attcaagctgctctttcaaatgaattgcatagcaagacagaaatgaagtatcaatataga
cacttccaacttctactttgtgcttctgagatcagtttacaatgtgggattcacatgagc
tgtatcacccatgccaaaaaggcttctcaacttgtgcttcctgatggttatttattcttt
gcacatctactattatgccgtttgtattccatgaaagacgatcatctaaactttatgaaa
gagtattcaaagtgtttggagctcaggacagattcccatattggttggatctgtctcaaa
cttatggaatgccaatatgaactgcaaatcgattcaaatgccatagacttgaactttgaa
aaatgcatcagaagggatggaagttcatggaatatgtggatggctgtatataacttagta
agaggaatgaattggttgcaaaaaagtgatctagtctcagcagagcagttcatggcagag
gcttgttcgttggcaggttttgaaagctgcctctttctatgtcatggtgccatatgtatg
gagcttgtcaggcagtgcagtgatcctcaatacctatcacgggctgttgagagccttacc
aaagttcaagaactttcattgattcccttaccttttgcctcaatattgttggctcaagca
gagggaagcctcggttctaaggggagatgggacagaaaccttcgccttgaatggtataat
tggccatcagaaatgaggcctgcagaggtctattttcaaatgcatttgcttgcaagacag
ttgaaacttgggccaaacactatatctagcatggagtcctctgaaagtcctcagagatgg
gttattcgggctattcacatcaacccttcttgcatgcgatattggagggttttacagaag
cttatggaataa
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