KEGG   Citrobacter amalonaticus Y19: F384_23995
Entry
F384_23995        CDS       T03934                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
cama  Citrobacter amalonaticus Y19
Pathway
cama02024  Quorum sensing
cama03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cama00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F384_23995 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    F384_23995 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cama03019]
    F384_23995 (hfq)
   03036 Chromosome and associated proteins [BR:cama03036]
    F384_23995 (hfq)
Messenger RNA biogenesis [BR:cama03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     F384_23995 (hfq)
Chromosome and associated proteins [BR:cama03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    F384_23995 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AKE61413
UniProt: A0A0F6RI20
LinkDB
Position
5142191..5142499
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQGSTAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggtcaaatcgagtcttttgat
cagtttgtgatcctgttgaaaaacacggtcagccagatggtttataagcacgcgatttct
actgttgtcccgtctcgcccggtttctcatcacagtaacaatgccggtggcggtaccagc
agtaactatcatcacggtagcagcgcgcagggttctactgcgcaacaggacagcgaagag
accgaataa

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