KEGG   Cobetia amphilecti: LCW13_05455
Entry
LCW13_05455       CDS       T07922                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
camh  Cobetia amphilecti
Pathway
camh02024  Quorum sensing
camh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:camh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LCW13_05455 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LCW13_05455 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:camh03019]
    LCW13_05455 (hfq)
   03036 Chromosome and associated proteins [BR:camh03036]
    LCW13_05455 (hfq)
Messenger RNA biogenesis [BR:camh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LCW13_05455 (hfq)
Chromosome and associated proteins [BR:camh03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LCW13_05455 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UBU49704
LinkDB
Position
1285830..1286078
AA seq 82 aa
MSKGQSLQDPYLNILRKERIPVSIFLVNGIKLQGQIESFDQFVILLRNTVSQMVYKHAIS
TVVPSRNVRLPAQDPSVPSTES
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtccaaaggtcaatcactccaggacccgtacctgaacatcctgcgcaaggaacgtatc
ccggtctcgatcttcctggtcaacggcatcaagctgcagggccagatcgaatccttcgat
cagttcgtgatcctgctgcgcaatactgtctcccagatggtttacaagcacgctatctcg
accgtggtgccgtcgcgcaatgtgcgcctgccggcccaggatccgagcgtgccgtccaca
gaaagctga

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