Caproicibacterium amylolyticum: H6X83_08095
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Entry
H6X83_08095 CDS
T07171
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
caml
Caproicibacterium amylolyticum
Pathway
caml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H6X83_08095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caml03021
]
H6X83_08095 (rpoB)
03400 DNA repair and recombination proteins [BR:
caml03400
]
H6X83_08095 (rpoB)
Enzymes [BR:
caml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H6X83_08095 (rpoB)
Transcription machinery [BR:
caml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H6X83_08095 (rpoB)
DNA repair and recombination proteins [BR:
caml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H6X83_08095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
QNO16928
UniProt:
A0A7G9WE16
LinkDB
All DBs
Position
complement(1695325..1699077)
Genome browser
AA seq
1250 aa
AA seq
DB search
MVNVKPVKVGRNTRMSFSKIDEVLQMPNLIEIQKNSYEWFLNDGLKEVFKDVSGITDYTG
NLVLDFVDYKLDTEKPNYSVMECKERDATYAAPLRVTARLLNKESGEIKESEVFMGDFPL
MTESGTFVINGAERVIVSQLVRSPGVYYKMEYDKTGKELYSATVIPNRGAWLEYENDAND
VFYVRIDKNRKLPVTVFIRALGLGSDTEIREYFGSSDYIDATLEKDPCKNTEEALFEVYK
KLRPSEPPTLDSAQSHINGLFFDSRRYDLSRVGRYKYNKKLNLAGRITGQVLSRPVVNPS
TGELMAEAGQAVSHELARQMDDAGVSVAYVTINEREVKVISNGMVDIKNFVSFDAGEECG
IKERVRYSVLADLLEASAGDEEALKEAIRTHVEELVPKHIIIDDIFASVSYMCNLQVGLG
TTDDIDHLGNRRIRSVGELLQNQFRIGFSRLERVIRERMTLQAQDLEVLTPHSLINIRPV
VAAIKEFFGSSPLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRM
CPIETPEGPNIGLISYLATFARINEYGFIEAPYRRVDKATGVVTRDVVYMTADVEDNYIV
AQANEPLDDDGHFENAKVNGRHRDQFVVVEREKVDFMDVSPRMVVSVATAMIPFLENDDT
NRALMGSNMQRQAVPLIKTESPIVGTGMEYKAGVDSGACVLCKHAGVVKSVSADEVRVIT
DDGDLDIYPIIKFLRSNSGTCFNQVPVVNRNDRVNAGDVIADGPATKDGEISLGRNALIG
FMTWEGYNYEDAVLISEKVVRDDVFTSIHIEEHEVEARDTKLGPEEITRDIPNVNEDMLR
DLDDSGIIRVGAEVHAGDILVGKVTPKGETELTAEDRLLRAIFGEKAREVRDTSLRVPHG
EYGIVVDVKIFTRENSRDELSPGVNKVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPV
EDMPYLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGMAARALGWKIMTPVFDGAHEEDIR
AAFREADMSEDGKFWLRDGRTGERFDNPVTVGIMYYLKLHHLVDDKMHARSTGPYSLVTQ
QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGQNIPK
PGVPESFKVLIKELQSLGLDMKVLDKDNKEIDLRQTFDDDDDMGFSPNGGNFDEPDVADN
LDGYSVNEADDALYDGPDSYVSGDGDDSSSEGTDGEDDLDISLDDIDTAD
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgtcaaaccggtgaaggtaggcagaaacacacgcatgagcttttccaaaatt
gatgaggtattgcagatgccaaaccttatcgaaattcagaaaaattcttacgagtggttc
ctgaatgatggcctcaaggaggtcttcaaagatgtctccggcattaccgactacacgggc
aacctggtcctggactttgttgactataagctggataccgaaaagccgaattattccgtg
atggaatgcaaggagcgggatgcaacctacgcagctcctctgcgcgtaacagcccgtctg
ctgaacaaggaaagcggggaaatcaaggaatcggaagtctttatgggtgatttcccgctt
atgacggaaagcggtacctttgttatcaacggcgcagagcgcgttattgtttctcagttg
gtgcgttccccgggcgtatactataagatggaatacgataagaccggcaaggaactgtac
agcgcaacggttatcccgaaccgcggcgcatggctggaatatgaaaacgatgcgaatgat
gttttttatgttcgtatcgataagaaccggaagctgccggtaactgtttttattcgtgca
ctgggccttggcagtgatacagaaattcgtgaatactttggcagcagcgactatatcgat
gcaacgctcgaaaaagatccctgcaaaaacactgaggaagcactttttgaagtctacaaa
aagctgcgcccaagtgaaccgcctacactggacagtgctcaatctcacattaacggcttg
ttttttgattcccgccgttatgatctttcccgtgttggccgctataaatacaataaaaag
ctgaatcttgccggacgcattaccgggcaggtattgagccgcccggttgtaaacccctcc
actggtgagctgatggcagaagctggccaggctgtttcgcatgagctggcccgccagatg
gatgatgccggtgtttccgtcgcatatgtaaccataaacgaacgtgaagtaaaggttatt
tcaaacggcatggtggacatcaagaattttgtttcctttgatgcaggggaagaatgtggc
atcaaagaacgtgtgcgttattctgtgctggctgacctgcttgaggcaagtgccggcgat
gaggaggctttgaaagaggcaatccgcacgcacgtggaagagttggtgccgaaacatatt
attattgacgatatttttgcttctgtcagctatatgtgcaacctgcaggtcggtcttggc
acaacagatgacattgaccatctgggcaatcgacgcatccgttctgttggtgaactgctg
cagaaccagttccgcatcggtttctcccgcttggaacgtgtgattcgtgagcgcatgaca
ttgcaggcacaggatttggaagtgctgaccccacattccctgattaatattcgtccggtt
gtggctgcaattaaggaattctttggttcctctccgctttcacagtttatggatcagacc
aacccgctggcggagctgacacacaagcgccgcctgtctgccttgggacccggcggtttg
tcccgtgaccgcgcaggatttgaggttcgagatgtacactatacccattacggacgtatg
tgcccgattgaaacgcctgaaggcccgaacatcggcctgatttcctatttggctactttt
gcacgcatcaatgaatatggctttattgaagcgccgtatcgccgtgtggataaagcaacc
ggtgtggttacccgtgacgttgtctatatgacagcggatgtagaggacaattacattgtg
gcgcaggcaaacgaaccactggacgacgacggacactttgaaaatgcaaaggtaaatggc
cgtcaccgcgaccagttcgtggttgtggaacgtgaaaaagttgattttatggatgtttct
ccgcgaatggttgtttccgttgcaacagcaatgattccgtttcttgaaaatgatgatacc
aaccgtgctctgatgggttctaacatgcagcgccaggctgtgccgctgattaagacggaa
tccccaatcgtcggtactggtatggaatacaaggccggcgttgactccggagcctgcgta
ctgtgcaagcatgccggtgtggttaagagcgtcagcgctgacgaagtgcgtgtcattaca
gatgacggagaccttgacatttatccgattataaagttcctgcgttccaactccggtacc
tgcttcaatcaggtgccggttgtgaatcgcaacgaccgtgtcaatgctggcgacgtaatc
gcagatggcccggcaacaaaggacggcgagatttcccttggcaggaatgccctgattggc
tttatgacgtgggaaggctacaactacgaggatgctgttctgatcagcgaaaaagttgtg
cgcgacgatgtgtttacctccattcatatcgaagagcatgaagtggaagcacgtgacacc
aagctggggccggaagaaatcacccgtgatattccgaacgtcaacgaagatatgctgcgt
gacttggatgacagcggtattatccgcgtcggtgcagaagtgcatgccggtgatattctg
gtcggtaaggtaacgccgaagggtgaaacagagctgaccgcggaagaccgcctgctgcgt
gctatctttggtgaaaaagcgcgtgaagtgcgcgatacttctctgcgtgtaccgcacggt
gagtacggtattgttgttgatgtaaagatatttacccgtgaaaacagccgcgatgagctg
agcccgggcgttaataaagtggttcgctgctacatcgcacagaaacgtaagatttctgtt
ggcgataagatggctggccgccacggtaataagggcgttgtttcccgcatcctgccggtg
gaggatatgccttatctgcccgacggcacaccgctggacattgtactgaacccactgggc
gtgccttcccgtatgaatatcggacaggtactggaagtgcatttgggtatggctgcgcgt
gcacttgggtggaagattatgacgcctgtatttgacggcgcacacgaagaggatattcgt
gctgcattccgcgaagcagatatgagcgaagacggcaagttctggctgcgtgacggccgt
accggtgaacgctttgacaaccctgttaccgttggcattatgtactacctcaagctgcat
catctggttgatgataagatgcatgctcgttctactggcccatattcactggttacgcag
cagcctttgggcggcaaggcgcagtttggtggtcagcgtttcggtgaaatggaagtttgg
gcactggaagcttacggtgctgcctatacactgcaggaaattctgactgtgaagtcggat
gatgttgtcggacgtgtaaagacctatgaagcaatcgttaagggtcagaatatcccgaag
ccgggtgtgcctgaatcctttaaggtcttgattaaggaactgcagagtttgggtctggac
atgaaggtactggacaaggacaacaaggaaatcgacctgcgccagacctttgacgatgac
gatgatatgggcttctcaccaaacggcggcaactttgacgagccggatgttgctgacaat
ctggacggctattccgtgaatgaagcagacgatgccctttatgacggccctgacagctat
gtaagtggtgacggtgacgacagtagcagtgagggcacagacggggaagacgacctggac
atttcactggatgatattgatacggcagactga
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integrated database retrieval system
