Capsicum annuum (peppers): 107845472
Help
Entry
107845472 CDS
T04646
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107845472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107845472
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107845472
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107845472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
107845472
NCBI-ProteinID:
XP_016545311
LinkDB
All DBs
Position
8:35915570..35948653
Genome browser
AA seq
2419 aa
AA seq
DB search
MIPFVSTVAASQIQFLLQSLNGSNSDTVFHELRQYLAYGVEGSILLLRTCIDHLNVYWKD
SKNTQLDPVFASIFRCILDKPNFSTVFSESLKDSAISEEFLVNLSNAFQLAISEKIGVGL
ALSDSENVDVKKCGTNYCMGQIAELCSTNSSLDDVKQIQNVLLFLDKSEGLSKHVDLFMH
VLSLVQSKEAQFILTPLLSDELREANFLRNLDFLNDDGEDDFDALVAEMEKEMSIADIMK
ELGYGCTATVLQCKEMLSLFLPLTEVTVARILGMVVCTGLGIEDNLNVFSTFHAALGSSA
ATDPSPLSSWNADVLIDAIKQLAPGLNWVTVMESLDHEGFYIPDRTAFSLLMSIYKHACQ
DPFPLGAICGSIWKNAEGQLSFLNCAVLMPPEVFTFAHSGRQLEYVDAVNDHKIQIGHAN
HAWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTAYNLLQREVAAA
AFPVMLNNAAASGMILHLWHVNTSILCWGLEEALHVDLDNMHKVLDACQELKILSSVLDR
IPYAFGIRLAALASRKELMDLEKWLSNSLSTYKDIFFEECLKFLREILLTAHDVTSNRFD
PPNALWTIFSETSSTFLKVLKSHSGLVSSRHLSEELDKLHMTYMDANSRRKSVGGADSSS
PSDGASDDIEAEANIYFHQMFSGQLSNEATVQMLARFKESTEKREQAVFECMIGNLFEEY
KFLSKYPERQLKIAAVLFGSLIKNQLVNHLALGIALRAVLDALRKPADSKMFVFGIMALE
QFVDRLTEWPQYCNHILQISHLRATHSDLVAFIERGLARLSLAHSESEVGHSPAADQFHG
PIPSSPMNTEGPTFPVVGQGGLQQSMQGPSSSQLPQRQQSSLEERKPPSALSSYLKPALS
PAVQPAAVPSSDNAGIQKPQGPSSTSAVLASSPGFLRPSRAITSARFGSALNIETLVAAA
ERRETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTEILKEQYFPWFAQYMVMKRASI
EPNFHDLYLKFLDKANSKALYKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGK
ITIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGIL
GLLAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVAPTCLLKDRVREVEGNPDFSNKDTGG
SSQPQIVTDAKSGIISSLNQVELPLEVASPHPSGPSRILSQYAAPLHLPSAPMTEDEKLA
ALGLSDQLPSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPIAM
DRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTC
KEPLRGSISTQLRNLLQGLGIASDLLEQAVQLVTNDNLDLGCAMIEQAATEKAIQTIDGE
IAQQLAIRRKHREGVGSTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPW
QNQSSQSSNAVPAGPSTSSGSGGVSRSYMSGTGQMNPNIYSSGSVNAGISAVPQPLEISE
EIDTSSQLNSASSPHLAMGDSVTSSSFETEAVVEPFTSVSAPEVQPVEPSSLAKESAASL
QPSNATAPSERVGNSTSEPLLTTGDALDKYQIISEKLESLVSEEADEAEIQALIAEVPAI
ILKCISRDEAALAVAQKAFKGLYENVTNSAHVGAHLAILSSIRDVSKLFVKELTSWVIYS
DEERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAISLIQMLVVSDSRVI
SELQNLVDSLAKIAARPGSPESLQQLVEIAKNPAANAAALSSVTFGKEDSNKQSREKKIA
VTATGTREDYGVSELVEPDTASFREQVSMLFAEWYRICEIPGANDATLAHYVLQLNQSGL
LKGDETSDRFFRRLTELSVSHCLSSEVMSSTPQPHQVQPLSFLAIDIYAKLVFSILKFYP
VDQGSSKLLLLPKVLAITVRFIQKDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGAN
FHVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQ
FMEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIIL
SAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSP
FLSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFA
VFLVGAALDVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSC
GGPKPVDENVVSGGIPDIH
NT seq
7260 nt
NT seq
+upstream
nt +downstream
nt
atgattccattcgtctcaaccgttgctgcttcacagattcagtttcttcttcagtccttg
aacggctccaattctgacactgttttccatgagctccgtcagtatctggcatatggagtt
gaagggagcatattgctgcttcggacctgcattgatcatctgaatgtttattggaaagat
tcgaagaacacacaactggatcctgtatttgcttccattttcagatgcatcctggacaag
ccaaatttcagcactgttttttctgaatcccttaaggattctgcaatcagtgaggagttt
ctagtgaatctttcaaatgcattccagttggcaatatctgaaaaaattggagttggcctt
gcattgtcagactcggaaaatgttgatgtcaagaaatgtggaaccaactattgcatgggt
cagattgcggagttatgttccaccaactcttctttagacgatgtcaagcaaattcagaat
gttcttctgtttctggataaatctgaaggcctctcaaagcatgtagacttgtttatgcat
gtgctatcactcgtccagtcaaaagaagcccagttcattttaactccattgctgtctgac
gaactccgtgaagctaattttttgaggaacttagatttcttaaatgatgatggtgaggat
gactttgatgctcttgtggcagaaatggagaaagaaatgagcatagctgacataatgaag
gaattgggttatggatgtactgctactgtcttgcaatgcaaagaaatgttgtccttattt
ttgccgcttactgaagtgaccgttgctaggatacttggtatggttgtatgtaccggctta
ggcatcgaggataacctcaatgtgttctcaacgttccatgctgctcttggtagcagcgct
gcaactgatccatcaccattgagttcctggaatgccgacgtccttattgatgcaataaag
caacttgctcctggacttaactgggtaacggttatggaaagcctagatcatgagggtttc
tatattcccgacagaactgccttttcccttttgatgtccatttataaacatgcctgtcag
gacccttttcctcttggagctatttgtggttctatatggaagaatgctgagggtcagctt
tcctttctcaactgtgcggtgttgatgcctcctgaagtgtttacctttgctcattctggg
aggcagctggagtatgttgatgcagtgaatgaccataaaatccaaattggacatgcaaat
cacgcatggttgtgtcttgaccttctcgaagttctttgccagctggctgagagaggttat
gcaagctctgtgcgatccattctggagcaccctctgaagcactgtccagaagtcttgctt
cttgggatggcccatattaatactgcatataatctactccagcgtgaagttgctgctgct
gcttttcctgttatgctaaataatgctgctgctagtggtatgattcttcatttgtggcat
gttaatactagcatcctgtgttggggtcttgaagaagcattgcatgtcgatctggacaac
atgcacaaagtcttggatgcctgtcaagagcttaagattctatcatcagtactggatagg
attccttatgcttttggcatcagactcgctgcacttgcttcccgcaaagaactcatggat
ttagagaaatggttgagcaatagcttaagcacatataaagatatcttctttgaggaatgc
ttaaagttcttgagggagatacttctcactgctcatgatgttacttccaaccgttttgat
cctcccaatgctctttggactattttttcagaaacttcttctacctttttaaaggtcctt
aagtctcattctggcttagtttcttcgcgccacttatccgaggagctggacaaattgcac
atgacatacatggatgctaattcaaggcgtaagagtgttggcggtgctgattcatcatcc
ccttctgacggtgcctctgatgatattgaagcagaagcaaacatatactttcatcaaatg
ttctctggtcagctgtctaatgaggcaacagttcaaatgcttgctcgtttcaaagaatca
actgaaaagagagagcaagcggtttttgaatgcatgatcggtaatctgtttgaagaatac
aagttcctctccaagtacccagaaaggcagctcaaaattgcggctgttctatttgggtca
cttattaagaatcagctggtaaatcatcttgcacttggtattgccttgcgagccgtcttg
gatgcattgcgcaagcctgctgattcaaagatgtttgtttttgggattatggcacttgaa
cagttcgttgatcgtctgaccgaatggccacaatactgcaaccatatcttgcaaatatct
catctccgagcaactcattcagatcttgttgcgttcattgaacggggacttgctaggcta
tcactggcacattctgaatcagaggtaggccacagtcctgctgctgatcaattccatggt
cctatcccatcttctccaatgaataccgagggtccaacatttcctgtggttggacagggt
ggcttgcagcaaagtatgcaaggaccctcttcaagccagcttcctcagagacagcaaagt
tccttagaggagaggaaacctccttctgctctctctagctacttgaagccagctttatca
cctgcggtgcaacctgcggcagttccttcaagtgataatgctggcattcagaagccacaa
ggtccaagcagtacttctgcagtgctcgcatcttctcctggttttctccgcccatctaga
gccattacctcagcaaggtttggttctgcattgaatattgaaacacttgttgctgctgca
gagagaagagaaacacccatagaggctcctgcatcagaaatacaggataagatttcattt
attatcaataacttatcagcggcaaatattgaagctaaagcaaaagagtttactgaaatt
ctgaaagagcagtattttccgtggtttgctcagtatatggtgatgaaaagagcaagcatt
gagccaaattttcatgacttgtacctgaagttcctagataaagcaaattcaaaagctctg
tacaaggagattgtccaagcaacctacgagaattgcaaggttcttttagggtcagagttg
ataaagtcaagttcagaagagcgttctttgttgaaaaacctcggaagctggctaggcaaa
atcacaattgggaggaatcaagtcttgagggcgcgggagattgatccgaagtctttgatt
atagaggcatatgaaaaaggtttgatgattgcagtaattcctttcacgtcaaaggttttg
gaaccatgccaaagcagtctagcataccaaccacctaacccatggaccatgggtattctt
ggattacttgctgagatttatgcaatgccaaatctaaaaatgaatctcaagtttgacatt
gaggtcctcttcaaaaatcttggtgtggatctaaaagaggtagctccaacttgtcttctt
aaagacagggtgagagaagtggaaggaaatcctgacttctccaacaaggatactggtgga
tcttcccaaccacagatagtaactgatgccaaatctggcattatatcttcactaaaccag
gttgaactaccactcgaggttgccagtcctcatcctagtggcccttcacgaattttatct
cagtatgctgctccgcttcatcttccatctgctccaatgacggaggatgagaagcttgca
gctcttgggctgtctgatcagcttccttctgctcaaggccttttgcaagggcaatcacca
ttttctgttagtcagcttcctgcaactgcatctaatatagaacagcaagttgttgtcaat
ccgaagcttcatgctctgggcctgcagttacattttcagagtgtacttcccattgctatg
gatagagctatcaaagagatagtgtccagcattgtgcagcgcagtgtttctatagcaact
cagactacaaaggaacttgttttgaaggactatgccatggaatcggatgagacccgtata
cgtaatgctgcacatttgatggttgccagtctttctggaagtctcgctcatgtgacatgc
aaggaacctttacgtggttcgatatcaacccagcttcgtaatttacttcagggattgggt
attgcaagtgatctccttgaacaagctgttcagctagttactaatgataacctcgatctt
ggctgtgccatgattgaacaagcagcaacagagaaggctatacagactattgatggagaa
atagctcaacagcttgccatacgaaggaagcacagagagggtgtcggttccacattcttt
gatgcaagcctttatacacaaggacatatgggtgggttaccagaagctcttcgccctaag
cctgggcgcttatcccattctcagcaacgtgtctatgaggattttgtccggttaccttgg
caaaatcaatcaagccaaagctcaaatgctgtgcctgctggtccttcaacttcctccggc
agtggtggtgtctccaggtcgtatatgtcaggaactggacaaatgaaccccaacatttac
tcgtctggcagtgtaaatgcaggaataagtgctgttcctcagccattggaaatatcagaa
gagatagatacttcgtctcaacttaatagtgcttcctctccccatcttgcgatgggtgat
agtgtcacttctagcagttttgaaactgaggctgttgttgaaccgttcacatcagtctca
gctcctgaagtgcagccagtggaaccatcaagtcttgcaaaggagtcagcagcttcctta
cagccatcaaatgcaactgctccctctgaacgtgttggaaatagtacctccgagccgttg
ctgactactggtgatgcattggataagtaccagattatctctgaaaagctggagagcctg
gtgagtgaagaagctgatgaggcagaaattcaggcacttattgctgaagttccggcaatc
atcctcaaatgtattagtagagatgaggctgccttagcagtggcccagaaggctttcaag
ggattgtacgagaatgtgacaaatagtgcgcatgttggtgctcatcttgcaattctgtct
tcaatccgtgatgttagcaagctttttgttaaggagctaactagttgggttatttactct
gatgaggagcggaagttcaacaaagacattacagttggtttgatacgcagtgaactgcta
aaccttgctgagtataatgtgcacatggctaagttacttgatgctggcagaaacaagtca
gctactgaatttgcgatatctcttatccaaatgctggtggtaagtgattctagagtcata
tcagagctacaaaaccttgttgattcacttgctaagatcgcagccagaccaggttctcct
gaatctctacaacaactagtggagattgctaagaaccctgctgccaatgctgctgcactg
tctagtgttacttttgggaaggaggatagcaacaaacaatctagagagaaaaagattgcc
gtgactgctactggtaccagagaagattatggtgtttctgaattggttgaaccagatact
gcaagcttccgcgagcaggtttctatgttgtttgccgagtggtaccgtatttgtgaaatt
cctggagcgaatgatgctactcttgctcattatgtcttgcaattaaaccagagtggccta
ttaaaaggcgatgaaacttcagatcgttttttccgcagactcacggaactttctgtttcg
cattgcctttcgtctgaggttatgagttccacccctcaacctcaccaagttcaacctctg
tcgttccttgcaattgatatctatgccaaattagttttctcaattttgaagttttatcct
gtggatcaaggatctagtaaattattgcttctgccaaaggttcttgctatcactgtcaga
ttcatccagaaagatgctgatgaaaagaaaatgatcttcaatcctagaccatattttagg
cttttcattaattggctagtggatctcagttccctggaccctgttttcgacggtgcaaat
tttcacgttttaacagctttagccaatgctttccatgctcttcagcccctcaaagttcca
ggattcagctttgcttggcttgaacttgtaagtcaccggagttttatgccaaaactactt
gctggaaatgctcagaagggatggccttattttcaacgattactggtggatctcttccag
tttatggagccctttctgaggaatgctgagctaggagaaccggtccagtttctgtataaa
gggactctcagggttttgttggttcttctccatgattttccggagttcctgtgtgactac
catttcagcttctgtgatgttatccctccaagctgcatacagatgcgaaatataatttta
agtgcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgat
ctcctcgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaa
tcaaagcagatgaagggtgatgtagatgaatacctgaagacaaggcaacaggggtcccca
tttttgagtgaattgaagcagaagttgcttctctctccaagtgaagccgccaaggctggg
acccgctacaatgttcccctgatcaactcccttgtactctatgttggaatgcaggctatc
cagcagctgcaggcaaaaactcctcatgcacagtcgatgcccagtagtgttccatttgct
gtattcttggttggtgctgctctagatgttttccagactttgataatggacttggacacc
gaggggcgttacttgtttttgaatgcagtcgctaaccagttgcgatacccaaataatcac
acacattacttctcctttattcttctctacctatttgcggaatcaaaccaggaaatgatc
caagagcagataaccagagttctattagaacgcctgattgtaaatcgacctcatccatgg
ggtcttctgatcacgttcattgagctgataaagaatccaaggtacaatttttggagccga
ccatttacaagatgtgcccctgagattgagaagctgtttgagtccgtttcaagatcatgt
ggtggccctaaacctgtggatgagaacgtggtgtctggcggaatacctgatatccattag
DBGET
integrated database retrieval system
