Capsicum annuum (peppers): 107850821
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Entry
107850821 CDS
T04646
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107850821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107850821
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107850821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
eIF2A
WD40_MABP1-WDR62_1st
Cytochrom_D1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Beta-prop_WDR41
TPM_phosphatase
Motif
Other DBs
NCBI-GeneID:
107850821
NCBI-ProteinID:
XP_016551077
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Position
12:complement(81202067..81234478)
Genome browser
AA seq
437 aa
AA seq
DB search
MESNNSLEQTLQDGKLYRHVNALIVAHLRDNNLNQAASAVASATMTPMNVEARPNKLLEL
VAKGLAVEKEETVRGGVSTAVPFDPIITGYGSIPTPRAASVDFSSVNDTKGPSKNIPKHE
SRHISEHKNVARCARFSPDGRFLATGSADASIKLFEIAKVKQMMQPDARDDPVRPVIRTF
YDHQQPINDVDFHPQNTVLISGAKDRTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSG
NYLLAGTDHPIPHLYDINTFKCYLPPNFQEMGLNGAINQVRYSSTGGMYVTASKDGAIQL
WDGVTASCVRSIDGAHGAVEATSANFTKDQRYILSSAKDSSVKLWEVGTGRLVKQYLGAT
HTHLRCQAVFNDTEEFVLSIDESLNEIVAWDALTTEKVARWPSNHIGAPRWLEHSPVEAT
FVSCGIDRSIRHWMEVP
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaataatagtttggagcaaacattgcaagacgggaaattgtaccgtcatgtt
aatgctctcatagttgctcatcttcgcgataacaatctcaatcaggctgcaagtgctgta
gcttcagctacaatgacaccaatgaatgttgaagctcgtcccaacaagctacttgaattg
gtcgcaaagggtcttgcagtggagaaagaggagacggtgagagggggggtttctacagct
gtaccttttgatccaatcataactggatatggctcaatcccaacccctcgggcagcatct
gttgatttcagtagcgtgaatgatacaaaagggccgtcaaaaaatatcccaaagcacgag
tcacgacatatttccgagcacaagaacgttgcaaggtgtgccagatttagtcctgatgga
agatttcttgctactggaagtgcggacgcatcaattaaattgtttgagattgcaaaagtt
aagcaaatgatgcagccagacgctagggatgacccagtgaggcctgttatacggactttt
tatgatcatcaacaaccaataaatgatgtggactttcatccgcaaaatacagtactcata
tctggagcaaaagatcgcaccatcaagttctttgatttttccaaaacagtagcaaagaga
gcatttagagtgattcaggatacacataatgtaaggtcggtatcatttcatccttccggg
aactatcttctggcaggaactgatcatccaattccccacctatatgacattaacactttc
aaatgctacctgccaccaaatttccaagagatgggtctcaatggtgctattaatcaggtt
aggtattcatctactggtggaatgtatgtaactgcatccaaagatggtgcaattcagtta
tgggatggggtaactgctagttgtgtgcgatccatagatggtgcacatggagcggtggag
gccacaagtgcaaattttacaaaggatcaaagatatattctctcttcggcaaaagactct
tcggtgaagctttgggaagttggcacaggaagattggtcaaacaatatcttggagccaca
catacacatttgcgctgccaggctgttttcaatgatacagaagaatttgtattatctatt
gatgaatctctaaatgagattgttgcatgggatgctctgactacagaaaaagtggctaga
tggccctccaaccatattggtgcaccccgttggcttgagcattccccggtagaagctaca
tttgtgtcttgtgggattgaccgatccattcggcattggatggaagtcccttag
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