Capsicum annuum (peppers): 124888260
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Entry
124888260 CDS
T04646
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124888260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
124888260
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124888260
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
YL1
Motif
Other DBs
NCBI-GeneID:
124888260
NCBI-ProteinID:
XP_047254620
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Position
1:160647101..160658112
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AA seq
1315 aa
AA seq
DB search
MSSSRRASNGRSPLVNQQSQITSFFSKKLSSPSPFPLLPKQIQHKPNPNPNTIPKSTTSP
CASPTTPSPLNGKRKIDVPLSAVADVKQSYGQEVVDKRVKVYWPLDKAWYEGCVKSFDSK
SGEHLVKYDDGDEEMIDLAEEKIEWVKEPVRKLRRLRRFSMGEAEEEEEKLDGLESVEDD
SEDEDWGKNVDKQASEGEDVSEDMDLEIEEDDDDDVVGPKRRKGSGSQVAAAKKRKTDEA
VKLTPSLSKKSKTAADKKSSNSKMDNSAVTGVNGKEPVATNVNCAKESNNDKVLLCGAAD
RFGQREAEKFPFLGKDRKDASRRSPGDANYDPRTLYLPPSFLKGLTGGQRQWWEFKSKHM
DKVLFFKMGKFYELYEMDAHVGAQELHLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVL
VVEQTETPEQLENRRRENGSRDKVVRREICAVVSKGTLTEGEMLAANPDASYLMAVTENS
QTAAFRQEKHTYGVCVVDITTSKIIIGQFEDDSDCSALCCLLSELRPVEIIKPAKLLSHE
TERVLLRHTRNSLVNELIPLSEFWDAERTISGVKGIYRNLSSSLLSSSPNEMGSHESTTS
EEDGESNFLPDVLCELINLGGNGSYALSALGGALYYLKQAFLDGSLLKFAKFELLPLSGF
CDSTRKQNMVLDAAALENLEIFENSRNGDSSGTLYAQINHCITAFGKRMLRSWLARPLYN
PESIIERQDAVAGLKVLNLPFVLEFRKELSRLPDMERLLARLFGSSEANGRNANKVTLYE
DAAKKQLQEFISALRGCESMVHACSSLGMILGNTDSVLLHHLLTPGKGLPDVDSVLKHFK
DAFDWVEANNSGRIIPHEGVDEEYDAACKQVQEVELKLTKHLKEQRKLLGDSSIDYVTIG
KDAYLLEVPESLCRSIPKEYELQSSKKGYFRYWNPALKKLIGELSQADSEKESKLKSILR
RLIGRFCEHHNKWRELVSTTAELDVLISLSIASDYYEGPTCRPNIKSVPSQDDVPVLLAE
NLGHPVLRSDSLDKGTFVSNNVSLSGPPNASFILLTGPNMGGKSTLLRQVCMAVILAQVG
ADVPASSFDLSPVDRIFVRMGAKDHIMAGQSTFLTELLETASMLSSASRNSLVALDELGR
GTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLSTDYQKDSRVSLCHMACQIGKGSGG
LEEVTFLYRLTPGACPKSYGVNVARLAGLPDDVLQRAAAKSEELEIYGHNNQSQENYSES
LTGKTAKLLQKLINLVVHNKCDGNKGVVLGELSGLQNRARILLEQRSYAERPSAF
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctcgccgcgccagcaatggcagatctccccttgtcaatcaacaaagccaa
atcacctctttcttctccaaaaaactatcctctccttcccctttccctcttctacccaaa
caaatccaacacaaacctaaccctaaccctaatactattcctaaatctactacgagtcct
tgtgctagtcctaccacgccttctcctctaaacggaaagcggaagatagacgtccccctt
tcagccgttgcagacgttaagcagtcatatggacaagaggtagtggataaaagagtgaaa
gtttactggccattggataaagcttggtacgaaggatgtgtcaagtcttttgatagtaaa
tctggtgagcatttggttaagtatgatgatggtgatgaggaaatgattgatttagcggaa
gaaaaaattgaatgggttaaggagcctgtgaggaagttgagacggttgcggagattttcc
atgggggaagctgaggaggaggaagagaaattggatggcttagagagtgttgaggatgat
tctgaggatgaagattggggaaagaatgttgataaacaagcgtctgaaggtgaggatgtt
tccgaggatatggatttggagattgaggaagatgatgatgatgatgtagttggacctaaa
aggaggaaagggagtgggagtcaggtggcggcggcgaagaagcggaagactgatgaagcg
gtgaagttaactccgagtttgagtaagaagagtaagactgctgcagataagaagagttct
aatagtaaaatggacaattcagctgtgaccggagtaaatgggaaagagcctgttgcaacc
aatgtgaattgtgccaaggaatccaacaatgacaaagtactgctgtgtggtgcagcagat
agatttggacaacgtgaagcagagaaattccctttccttgggaaagatagaaaggatgca
agtaggaggtccccaggggatgccaattatgatccaaggactctctacctacctcctagt
tttttaaaaggtttaactggtggtcagagacaatggtgggagttcaagtcgaagcacatg
gataaagttctgttttttaagatggggaaattctatgagctctatgagatggatgcacat
gttggagcccaggaacttcatttgcaatatatgaagggagagcaaccacattgtggattt
ccagaaaagaacttctcaatgaatgtagagaagttggctcggaagggttatagggttctt
gtggttgagcaaacagagacacctgaacagctcgagaatcgtcgaagagagaatggatct
agagataaggttgtcagacgggaaatatgtgcagtggtctctaaaggaacattaactgag
ggagaaatgcttgcggcaaaccctgatgcttcatatttgatggcagtgaccgaaaactct
caaactgctgcattccgacaggagaagcatacctatggtgtctgtgtggtggatattacc
acaagcaagattattattggacagtttgaggatgattcagattgtagtgccttgtgttgt
ctactttctgagttaagaccggtggaaataataaagccagcaaaattgcttagtcacgag
actgagagagtgctgctgcggcacacgcgaaattcgctggtgaatgagttgattcctctt
tctgaattttgggatgctgagagaacgatttctggggtgaagggaatatataggaacctg
agctcttcacttctgtcatcatctccaaatgaaatgggatcacatgaaagcactacctct
gaggaagatggtgaaagtaactttctaccagatgttttatgtgagcttataaatcttggt
gggaatgggagttatgcactctcagcactcggaggagctctatactacttgaagcaagct
tttctggatggatccctgctcaaatttgcgaaatttgaactacttcccctttctggtttt
tgtgatagtactcgaaaacagaatatggttcttgatgcagctgcactggagaatcttgag
atatttgagaacagtcgaaatggagattcttcagggacattatatgctcaaatcaaccat
tgtatcactgcgtttggaaaaaggatgctcagatcatggcttgcaagacccttatataat
ccagaatctattatagaacgtcaggatgctgtagctggattaaaggtgctcaatctacct
tttgttcttgagtttagaaaagagttatcaaggcttcctgatatggaacgattgcttgcc
cgcctctttgggagcagtgaagcaaatggaagaaatgcaaataaagtgacgttatatgag
gatgcagcaaagaaacaactgcaagagttcatatcagctttacgtggatgtgaatcaatg
gtgcatgcatgctcttcacttggaatgatcttgggaaacacagactcagtgctactacat
catctattaacacccggcaaaggtcttccagacgtagattcagttctcaagcatttcaag
gatgcttttgattgggtggaagcaaataactcgggtcgtattatacctcatgaaggggtt
gatgaggaatatgatgctgcatgtaaacaagttcaggaggttgaacttaaattgaccaag
cacctgaaggaacagaggaaactgcttggagactcatctatagattacgtgacaatagga
aaagatgcatatcttttggaagtaccagaaagtttgtgcaggagcattccaaaggagtat
gaattacagtcatcgaaaaagggctatttcaggtactggaatccagccttaaagaaatta
attggagagctctcacaagctgattccgagaaggaatctaagctaaaaagcattttgcgg
aggttgataggacgtttttgtgaacatcataataagtggagagaattagttagtaccact
gcagaattggatgttttaatcagtttatcaattgcaagcgattattatgagggaccaaca
tgtcgtccaaatatcaagtcagtgccaagtcaagatgatgtgccagttcttcttgctgaa
aatttaggacatcctgttcttcgaagtgattctctagataagggaacctttgtttccaac
aatgtttcacttagcggtcctccaaatgccagctttatccttctcactggtcctaacatg
ggagggaaatcaactcttttacgccaagtctgcatggctgtaatattggcccaggtaggt
gctgatgtaccagcatcatcgtttgacttatcacctgttgatcgtatatttgtaagaatg
ggggccaaagatcatattatggcaggccagagtacattcttgacagaactcttggaaact
gcttcaatgctgtcttcggcaagccgtaattcacttgtcgcactggatgaacttggtcgc
ggtacatctacttctgatggacaagcaatagctgagtcggttctcgagcactttgtccac
aaggtgcaatgtagaggaatgttttctacccactatcatcgattatctaccgactatcag
aaagactccagggtctcgctgtgccatatggcatgtcaaattgggaaagggtccggaggt
cttgaggaagttacttttctttacaggttgacaccaggtgcatgccctaaaagttatggt
gtcaatgttgcacggcttgctggacttcctgatgatgtgcttcagagagctgctgcaaaa
tctgaagagcttgagatttatggccacaataatcaatctcaagaaaactattctgagagt
ttgacagggaagacagcaaaactgctccaaaaattgataaatttggttgtacataataaa
tgtgacggcaacaagggtgtggttcttggtgagttaagtggattgcagaacagagcaaga
atactccttgaacaaagatcatatgcagagcgcccaagcgctttttag
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