Capsicum annuum (peppers): 13540196
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Entry
13540196 CDS
T04646
Symbol
rpoB, C329_p076
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
13540196 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
13540196 (rpoB)
03400 DNA repair and recombination proteins [BR:
cann03400
]
13540196 (rpoB)
Enzymes [BR:
cann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
13540196 (rpoB)
Transcription machinery [BR:
cann03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
13540196 (rpoB)
DNA repair and recombination proteins [BR:
cann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
13540196 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
13540196
NCBI-ProteinID:
YP_006666022
UniProt:
J7H6R6
LinkDB
All DBs
Position
Pltd:complement(24246..27458)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLWDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI
LVLSSAMGLNLREILENVCYPEIFLSFLSNKERKKIGSKENAILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGM
GALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVA
AGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDTILLAGN
GDILSIPLVIYQRSNKNTCMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNL
DKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKRGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTSNPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctctgggatggaaatgagggaatatctacaatacctggatttaatcagatacaattt
gaaggattttgtaggttcattgatcaaggtttgacggaagaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggtc
gaacccttgataaaggaaagagatgctgtgtatgaatcactcacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaacagtagggatatgcaagaacaaacaattttt
atcggaaacattcctctaatgaattccctgggaacttctatagtcaatggaatatataga
attgtgatcaatcaaatattgcaaagtcccggtatttattaccgatcagaattggaccat
aacggaatttcggtctataccggcaccataatatcagattggggaggaagatcagaatta
gaaattgatagaaaagcaaggatatgggctcgtgtaagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggtttgaatctaagagaaattctagagaatgtttgctat
cctgaaatttttttgtcttttctgagtaataaggagagaaaaaaaattgggtcaaaagaa
aatgccattttggagttttatcaacaatttgcttgtgtaggtggcgatccggtattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccgaagactgaaccttgatataccccagaacaatacattt
ttgttaccacgagatatattggcagccgccgatcatttgattgggctgaaatttggaatg
ggtgcacttgacgatatgaatcatttgaaaaataaacgtattcgttctgtagcagatctt
ttacaagatcaattcggattggctctggttcgtttagaaaatgtggttcgggggactata
tgtggagcaattcggcataaattgataccgacacctcagaatttggtaacctcaactcca
ttaacaactacttatgaatcctttttcggtttacacccattatctcaagttttggatcga
actaatccattaacacaaatagttcatgggagaaaattaagttatttgggccctggagga
ctgacaggtcgcactgctagttttcggatacgagatatccatcctagtcactatggacgt
atttgcccaattgacacatctgaaggaatcaatgttggacttattggatccttagcaatt
catgcgaggattggtcattggggatctctagaaagccctttttatgaaatttctgagagg
tcaaccggggtacggatgctttatttatcaccaggtagagatgaatactatatggtagcg
gcaggaaattctttagccttaaatcaggatattcaggaagaacaggttgttccagctcga
taccgtcaagaattcttgactattgcatgggaacaggttcatcttcgaagtatttttcct
tttcaatatttttctattggagcttccctcattccttttatcgaacataatgatgcgaat
cgagctttaatgagttctaatatgcaacgtcaagcagttcctctttctcgctccgagaaa
tgcattgttggaactgggttggaacgacaagcagctctagattcgggggctcttgctata
gccgaacgcgagggaagggtcgtttataccaatactgacacgattcttttagcgggtaat
ggagatattctaagcattccattagttatatatcaacgttccaataaaaatacttgtatg
catcaaaaaccccaggttcctcggggtaaatgcattaaaaagggacaaattttagcggat
ggtgctgctacggttggtggcgaacttgctttggggaaaaacgtattagtagcttatatg
ccgtgggagggttacaattctgaagatgcagtacttattagcgagcgtttggtatatgaa
gatatttatacttcttttcacatacggaaatatgaaattcagactcatgtgacaagtcaa
ggccctgaaaaagtaactaatgaaataccgcatttagaagcccatttactccgcaattta
gacaaaaatggaattgtgatgctgggatcttgggtagagacgggtgatattttagtaggt
aaattaacaccccaggtcgtgaaagaatcgtcgtatgccccggaagatagattgttacga
gctatacttggtattcaggtatctacttcaaaagaaacttgtctaaaattacctataggt
ggcagggggcgggttattgatgtgaggtggatccagaaaaggggtggttctagttataat
cccgaaacgattcatgtatatatttcacagaaacgtgaaatcaaagtaggcgataaagta
gccggaagacacggaaataagggtatcatttcaaaaattttgcctagacaagatatgcct
tatttacaagatggaagatccgttgatatggtctttaacccattaggagtaccttcacga
atgaatgtaggacagatatttgaatgttcactagggttagcagggagtctgctagacaga
cattatagaatagcaccttttgatgagagatatgaacaagaagcttcgcgaaaactagtg
ttttctgaattatatgaagccagtaagcaaacatcgaatccatgggtatttgaacccgaa
tatccaggaaaaagcagaatatttgatggaaggacggggaatccttttgaacaacccgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatccatggg
cgttccagtggacattatgcgcttgttacacaacaaccccttagaggaagagccaaacag
gggggacagcgggtaggagaaatggaggtttgggctctagaagggtttggggttgctcat
attttacaagagatgcttacttataaatcggatcatattagagctcgccaggaagtactt
ggtactacgatcattgggggaacaataccgaatcccgaagatgctccagaatcttttcga
ttgctcgttcgagaactacgatctttagctctggagctgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa
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