Magallana angulata (Portugese oyster): 128166292
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Entry
128166292 CDS
T09348
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu04512
ECM-receptor interaction
canu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128166292
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128166292
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
canu00535
]
128166292
Proteoglycans [BR:
canu00535
]
Extracellular matrix (ECM) proteoglycans
Others
128166292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128166292
NCBI-ProteinID:
XP_052687336
LinkDB
All DBs
Position
10:9326533..9352236
Genome browser
AA seq
1013 aa
AA seq
DB search
MLSRLRSAHPGLLISAIFILYIPTSYCSKCDYTVYGKDDAPEYDFISSFNNFKRVIGVRI
DRRSGTQVGQTSYEFRRRAERGDLIIPTRNLFSDGFPSEFSLSVTLKLASVTRRESWNLI
DITNPQGETDFAVRFVGELRQIHLLYRDKVLNTLTTVEFDKKDTRNVFTKGWHKMQISVQ
KTEASLYIDCTRIQTVQMTPSDVSNIGYMTVAKSMTSKHTTPKFYLQWLAMHCDPTKPSR
DSCEELEDIDDSDSQTYKDIMLADKQQRGGSKCPTQCPPGKNGIPGKQGVSGLPGKPGTP
GQDGLPGERGPAGKDGNDGRPGEPGKPGLLGGQGRPGERGERGLNGKDGSAGEPGKPGKD
GSVGPRGLQGEEGPRGERGETGSPGPAGPPGESVQGPEGVEGPQGPPGQPGPLGPQGVPG
QQGNPGKDGKPGERGEKGDSGMPGLPGAQGAQGLQGVPGLPGPPGASITTADGKAGNVQQ
VQGPPGPAGPQGIQGNAGLPGLPGEKGSQGLRGDRGESGERGEQGPSGNDGRPGVDGQPG
AVGIPGRDGKMGPKGDSGADGIPGKDGVPGKHGKHGERGEKGEPGEPGLPGKPGPPGPAY
SPFMSDDPNAIMDYDYKYRGEQGINGQPGPPGKDGRSGVPGSPGIPGEPGQPGRPGEMGD
QGDPGDVGPRGLPGVPGLKGSHGDPGMDGMQGDQGVAGAPGPRGEPGKDGRPGQPGTQGI
SGPMGPIGPIGQPGPPGPPGPPGPSFDVKSIIGGGMSDSSMFGPSGAPVSCHQRQGYPGP
SGAPGLTGMPGERGPSGERGTPGSTGAPGVPGISGPPGQQGPPGHRGQPGMPGKPGLPGR
MIPESEIRELCMRLLRENFDELVAGLRGPPGPPGVGKPGAQGPPGRVGAQGERGLPGPTG
ERGYAGMPGLPGPMGPQGPAGPEGVKGDRGEIGEGIQGKQGNPGIPGPPGPPGEGVMGRP
GERGNPGAHGQPGSAGPPGKTGPPGYCEYCNFASGRRSGDYIQLGPGRSNTKG
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcaagattacgatccgcacatcctgggttgcttatatcagctatatttattcta
tacattccaacttcttactgctcaaaatgtgattacacggtatacggaaaggatgacgca
ccagagtatgattttatatcctccttcaacaattttaaacgagtgattggggtgaggatt
gacaggaggagcggtacccaggtgggacagacatcctacgagttcaggaggagagcggag
cggggggacttgatcattccaacaagaaatttgttttcggacgggtttccgtcggagttc
tctctctcggtcaccttgaagctggccagtgtaacgaggcgcgagtcatggaacctgatc
gacatcacgaacccccagggcgagacagacttcgctgtgcgctttgtcggggagttacga
caaattcatctcttgtacagggacaaggttctcaatacgctaacaacggtcgaattcgac
aaaaaagacacgcgaaatgtgtttacaaagggatggcacaagatgcagattagcgttcaa
aaaactgaggcctctctgtatattgactgcacaaggatacagaccgtccagatgacgcca
tctgatgtcagcaacatagggtacatgaccgtcgctaaatcaatgacttccaaacacacc
acaccaaagttttacctgcagtggctagctatgcactgtgatcccaccaagccctccagg
gacagctgtgaggagttggaggatattgacgacagcgattctcaaacatacaaggatatt
atgttggcagacaagcaacaacgtggaggatccaaatgtcccacccaatgtccgcccgga
aaaaacggaatcccaggaaaacaaggtgtttccggtcttcctggcaaaccaggaaccccc
ggacaagatggacttccgggagaaagaggaccggcaggaaaagacggaaacgacggacga
cctggagagcctggtaaacccggactgctgggaggtcagggtcggcccggagagagggga
gaacgaggcttaaatggaaaggacggaagcgccggagagcctggcaagccaggaaaagat
ggaagtgttggaccaagaggactgcagggagaagagggaccacggggagagaggggagaa
actggttcccccggccctgccggaccccccggagaaagcgttcaaggacctgaaggagtt
gaaggtccccaaggacccccaggtcaaccaggacctctgggaccacagggagttcccggg
caacaaggcaaccccggcaaggacggtaaaccaggagagaggggggagaagggagacagc
ggtatgcctggtctaccgggggcacaaggggcccaaggtttgcagggtgttccaggactc
cccggcccaccgggcgcatcgattacaactgctgatgggaaagccggcaatgttcaacaa
gtgcagggacctcccgggccggcgggtccccaggggattcaaggcaacgccgggttacct
ggtttgcccggagagaaaggaagtcagggtctaagaggggacaggggggaatccggagag
cggggagaacaggggccgtccggaaacgatgggagaccaggagtagatggacagccagga
gcggtcggaatccccggaagagacgggaaaatgggaccaaagggcgactcaggggcggac
ggaatccccgggaaagacggagttccgggaaaacacggtaaacatggcgaacgtggagaa
aaaggagagcctggagaaccgggactacctgggaaacccggccccccgggacctgcatac
tccccgttcatgagtgacgatccgaacgcaatcatggattatgattacaaatacagaggc
gaacagggaataaatggacagccaggacccccaggaaaggacggacgctccggtgttccc
ggtagccccgggataccaggagagcccggacagcccgggagaccgggagaaatgggggat
caaggtgacccaggagatgtgggaccaagagggttaccgggagttcccggactgaaaggt
agccatggcgacccaggcatggacggcatgcagggagatcagggagtggcaggtgccccg
ggacctcgcggggagccaggaaaagacggaagaccgggacaaccagggactcaaggaata
tcaggtcctatgggacctattggtccgattggacaacccggacctcctggtccccccgga
cctccaggaccttcgtttgatgtgaaatctataattggcggtggtatgtcagatagcagc
atgtttggtccaagtggtgccccggtaagttgtcaccagcggcaaggatatccgggcccc
tcaggtgcccccggactcacaggaatgccaggagagcgtgggccatcgggagagcgaggt
acacctgggtccacgggtgcccccggagttcctggtatttccggccccccgggccaacaa
ggaccaccgggtcacagaggtcaacctggaatgccgggaaaaccaggactaccaggacgc
atgattccagagtctgagatcagggagctttgtatgagactactgagagaaaactttgat
gaattggtcgccggactacgaggaccgcccgggcccccgggcgttgggaaaccaggagct
cagggacctccaggccgggtgggcgctcaaggtgagcgtgggttacctggaccaacaggt
gagcgtggttatgccggcatgccaggacttccaggcccaatgggacctcaaggtcctgcg
ggacctgagggtgtgaaaggagacaggggagaaattggggaaggaattcagggcaaacaa
gggaaccctggaatcccaggtcctcctggacctccaggcgagggggttatgggtcgtcct
ggagaaaggggaaaccccggagcccatggtcagccaggcagtgccggtcccccaggaaaa
acaggaccccccggatattgtgaatactgtaactttgcatccggtagaagatctggagat
tatatacaacttggtccaggccggtcaaacaccaaaggctaa
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