Magallana angulata (Portugese oyster): 128176368
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Entry
128176368 CDS
T09348
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128176368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128176368
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128176368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_16
TPR_14
TPR_8
TPR_12
TPR_7
TPR_9
ARM_TT21_C
ANAPC3
FAT
TPR_10
DUF7017
TPR_COPA_B
TPR_30
Motif
Other DBs
NCBI-GeneID:
128176368
NCBI-ProteinID:
XP_052698593
LinkDB
All DBs
Position
3:complement(14549270..14562944)
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AA seq
1478 aa
AA seq
DB search
MDPKEVKSALKNARECIKNKDYKEALRHCKGVLAQDKSNYNAFVFVGVAADGLEQADQAV
KAYRRATEVDPEQPLAWQGLSGFYEKHPSSENDKELLQVYQKLRGLCEKDSDKKIEITKK
LVHLHIKLGEVVEGVDLYIKLLSEVSDDSIKCSLQTELLSLLSRLPSLTQDQEQLLVDMV
ESVLKMDSHLEEGVVGLYLDVLMKKNDASRLEKCCQLVCKKYSSMKYPLEVNILLCMDKA
LGSESLLPTMEAALSDLMTRLAELDSASQILTAAQGFQSLCNKELIQARDSFLKVLPDLE
TTVCVQYYLSLTYYLLHKLTDAESTAKQCVLSLGKKTRRLTVASGPVSRAVSVLKARILF
RTGTPSSLQTALTLTQELCTEMSSPSVLSLQGLILLKLNRVEETEEIIDKLDDGENRMAL
EGHVKFYQAEFTKSAVIFCELMKKVSSSSEYHLMYAKSLWYDKSSLSNNLQTCYTALLKS
AKLDPYSSEPFEYLGRFYTEIQKDKGKGKRCYQKAFDLDRNNDKAGEALCDLMTELGEEH
DAFQLLLSVTSSASAGCCKWAWLRLGLHQVKHDTISAAISSFQSALRADPKDPHVFECLA
EAYYKRGSYTAALKAFKKASELNPKSLYSLFMIACIKQTLRVLSEAVDNYKHILEGSPNY
VPALKGLGETYVLLAKHHLSQGFNGRAKLNCQDALQCLTRAVCHRPDLSCLWKLMGDSCT
IIHPLPTKNFSFVVPENLYKSKDSENSCELNLQQTLQLGARCYGRALKLLPECAQLWHDL
GFNLYQQSLHSEDENAVGVAEKSAEALKKGLSLEPANHQIWNTLGLVYCHSGLNKPSLGQ
HCFIKSIQAESENVVAWTNLATLYLEKGNMQLAHEAFKKAQSLDPNYVSCWIGQAMIAET
VGDDDAMDLFRHTTELSPHVEGSIGYAHWVCTLLKDKAKHSTEMYRYAIHQMAAIPAASD
ALARYLDLVKTNPCAYNMYGLLMEQQELYRSAKTAFIRSINLLEPSDILLNHVKLNLARV
LCKLGDYSGAVTLYTKFGELDSLQDLCHMGLAFYKSQQYTESYQAYDKALEVSTNDTDSS
QIHAALGMVAYKFGDIDGAKASLFQSSQLQPASCHGLEALCALGLKCRDVTLTHAVLQEL
VGTEMDNSGIYFTVLQYGLLEENWELAKSFLEKCIHWFPDKYTLWRLLSRLQLRHHHGNK
PSTAAMCMQAAMSLEPKSQELMTEVAMGQLLDGKHVSKDTKNNALLSAQRALLINPGKLG
NWCSLVSSVHCQSELEAESERVQALHKIETRYLTWLMSAEELSEDLRTWCLKQLTAAQIL
SGERTLESLSGELKEYIANLLQDKSLQSSDVQHVFSLYKTLLNDGGNDEVTKCFSRLTDD
LIKKTSSPDPLIMLMRAIILMKTNPKLAKHRLVDVLIAVRSERPQPLLLRSVSRRCLLSI
LRESPDKDAELIQLILTEAENDGDDETVNFYQQFIKDA
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggaccccaaggaagttaaatcagcattgaaaaatgctagagaatgtataaagaataaa
gactacaaagaggctctgagacattgcaaaggagttttggcacaggacaagagcaattac
aatgcctttgtatttgtgggggtggctgctgatgggcttgaacaggccgatcaggctgtg
aaggcctacagacgagccacagaggttgatccagaacaaccacttgcatggcagggtctg
agcggtttctatgagaagcacccatcctctgaaaatgacaaggaactattgcaggtctat
caaaaactcagaggactttgtgaaaaagacagtgataagaaaattgagattacaaagaag
cttgttcatctacacattaaacttggggaggttgttgagggtgtagatctgtacatcaaa
ttgttatccgaggtgtcagatgactccattaaatgtagtctacagacagagttattgtcc
ttgctgtccagattgccttccttaacacaagatcaagaacaacttctggtagatatggtt
gaaagtgttctgaagatggactcacacctagaggagggggtggttgggctctacttggat
gttcttatgaagaaaaatgatgcatcaaggttggaaaaatgttgccagcttgtttgtaaa
aagtattcatcaatgaagtatccacttgaagtcaatatactgttatgtatggacaaagcc
ctaggttctgagtcccttctgcctacaatggaggctgctctctctgatttgatgacaaga
cttgcagagttagacagtgcgagtcagatacttacagctgctcagggttttcagtccctc
tgtaacaaggaactgatccaggccagggacagcttcctcaaagtgctaccagacctggag
accacagtctgtgttcagtattacctgtcactcacctactatctgttacataagctgaca
gacgctgaatctactgccaaacagtgtgtcctatctctggggaagaagacgagacgtctg
accgttgccagtggtcctgtatccagggcagtcagtgttctaaaagccaggatcctattt
cgcactgggactcccagctccctccagactgccctaaccctcacccaggagctgtgtaca
gaaatgtcaagtccatcagttttatctttgcaagggcttattttgctgaaattgaacaga
gtagaggaaacagaggagataattgataagctggatgatggtgagaatagaatggccttg
gagggacatgtcaagttttatcaggcagaattcaccaagtcagcagtcatattttgtgag
ctgatgaagaaggtcagttcaagcagtgagtaccacctgatgtatgccaagtctctgtgg
tacgacaaaagttcactgtcaaacaatctccaaacgtgctacactgctctattaaagtct
gccaaactcgatccctacagcagtgagccatttgagtacttggggaggttttacactgag
atacagaaagacaaggggaaaggaaagcgctgctatcagaaagccttcgacctggacagg
aataatgataaagctggcgaggcactatgtgatctaatgacagaactaggggaagagcat
gatgcctttcagttgttattgtctgtgacaagcagtgctagtgctgggtgctgtaagtgg
gcgtggctgaggttgggtcttcaccaggtcaaacatgacacaatatcagcggccatctcc
agcttccagtcggctctgagggccgatcctaaagacccgcatgtgtttgagtgtttggct
gaggcctactataagagaggaagttacactgctgccctcaaggccttcaaaaaagcttca
gagttgaatccgaaatctttgtacagcctgttcatgattgcttgcattaagcagacctta
agggtgctgagtgaggctgtagataattacaagcatatactggagggctcccccaattac
gtaccagctctgaaaggtctgggggagacctatgtactgctggccaagcatcacctctct
cagggctttaatgggcgtgccaagctgaactgtcaggatgctcttcaatgtcttaccagg
gcagtgtgccacaggcctgatttgtcctgcctttggaagttgatgggtgactcctgcaca
atcattcaccccctcccaacaaaaaacttcagttttgtagtgcctgaaaatttgtacaaa
tccaaagactcagaaaacagttgtgaactcaacttacaacagactctacagcttggagcc
aggtgctatgggagagctctaaagctgttaccggaatgtgctcagctgtggcatgatctg
gggttcaatctgtaccagcagagcctgcactcggaggatgagaacgcagtgggtgtggcc
gagaagtcagcagaggcccttaagaaggggttgtccctggagcctgccaatcatcagatc
tggaacacactcggtcttgtttattgtcactcaggtctgaataaaccatcacttgggcag
cactgttttatcaagtctatacaagcagaatctgaaaatgtggtggcatggacaaaccta
gcaacactttatcttgaaaaaggaaacatgcagttagctcatgaagcattcaaaaaggcc
cagagtttggacccaaactatgtgtcctgttggattggtcaggccatgattgcagaaaca
gtgggagatgatgatgctatggatttgttccgacacactacagagttatctccccatgtt
gagggttccattgggtacgcccactgggtgtgtacattactcaaggacaaagccaagcac
agcacagagatgtaccgctacgccattcaccagatggcggccattccggctgcctccgac
gctctggccagatatctggaccttgtgaagacaaacccttgtgcatacaacatgtatggg
cttctgatggaacaacaggaactgtacagatcagcaaagacggccttcatcaggtctatt
aatctactggagccgagtgacattctcctgaaccacgtcaaactcaacctggccagggta
ctgtgcaagcttggggactactctggtgctgtgactctgtatacaaagtttggagaactg
gactctctgcaggacctgtgtcacatgggcctggccttctacaagtctcagcaatacaca
gaaagctaccaagcttatgacaaagccctagaggtcagcaccaatgacacagatagttca
cagattcacgctgctttggggatggtggcttataagtttggagacatagatggagccaaa
gcttctctctttcaaagttcacaactgcagcctgcctcttgccatggacttgaggctctt
tgtgcccttggtctgaagtgtcgcgatgtgaccttgacccatgctgtccttcaggaactg
gtcgggacagagatggacaactctggaatatatttcactgtccttcaatatggtcttcta
gaagaaaactgggagcttgcaaaatcattcctagaaaaatgtatccactggtttccagat
aaatatacactctggaggcttttatcaaggttacagctcagacatcaccatggtaacaaa
ccctccactgcagcgatgtgtatgcaggcagcgatgagtctggagcccaagagtcaggaa
ttgatgacagaggtcgccatgggacaactactggacggcaaacatgtgtcaaaggacacc
aaaaataacgccttactgagtgcacaaagagcattgctcatcaacccaggtaaattaggc
aactggtgctctctggtctcctctgttcactgtcaatcagagctggaggcggagtctgag
cgagttcaggctctccacaagatagagacccgctacttgacatggctgatgtcagcagaa
gagttatccgaagacttgagaacttggtgtctaaaacagctaactgctgctcagatactc
tcaggggaaagaactctggaatctctaagtggtgaattgaaggaatatattgcaaatcta
cttcaagataaatcattacaatccagtgatgtacaacatgtcttcagtctgtacaagact
ctgctgaatgatggaggaaatgatgaggttaccaagtgcttctccagactgacagatgac
ctgataaagaagacctcttcaccagaccccctcataatgctgatgagagctatcatcctg
atgaagactaacccaaaactggccaagcatcgactggtggatgttctgattgccgtcagg
tcggagcgcccccagcctctactcctccgctccgtctccaggagatgtctgctcagcatc
ctgcgggaaagtccagacaaagacgcggaactcatccagctgattctgacagaggcagaa
aatgatggcgatgatgaaacagtgaacttttatcagcagtttatcaaagacgcttga
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integrated database retrieval system
