Magallana angulata (Portugese oyster): 128176901
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Entry
128176901 CDS
T09348
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128176901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128176901
03400 DNA repair and recombination proteins [BR:
canu03400
]
128176901
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128176901
Messenger RNA biogenesis [BR:
canu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
128176901
DNA repair and recombination proteins [BR:
canu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
128176901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
128176901
NCBI-ProteinID:
XP_052699385
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Position
3:43702350..43704862
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AA seq
416 aa
AA seq
DB search
MLNKASCNDKASLKNDCISVLPTGYGKSLIFEILPFVDFSFYDRQCLVLLICPLNVIIEQ
EIAKLGAKSIRASDLLYKDESKDLTPILYIVGHPEDITQPSILEEVSRLNRRTFIVVDEA
HLVPQWGEEFRPMFRNICNLKSINSHLTFILALTATASVKVQKSIASHLTMKKPVFLRSL
PVLNSNIKMTIQERPSSTGGNNRVHSAYDYIFKPVNSQIIEDLKSNKEVKVVLATVALGM
GADLRNVKHVIHAGPPTSPEVYVQEVGRAGRDGQAAEAKLYFNNSDLAEKPIDNSMIEFI
RSKSCRRQHLSAYFDAPFESVDNCCDVCCKEGANVIGFKVPSLEQRHYVRLSLQAYINAD
PSGELGFIMSEEKVQIIVDCFEFIKDESYLSKLLNSSVPESVSSSLFAILSSFQND
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaaagcaagttgtaacgataaagcaagccttaaaaatgattgcatatcagtg
ttaccaactggatatgggaaatcactgatatttgaaattcttccctttgtggacttttca
ttctatgatcgacagtgtttagttctgttgatatgcccattgaatgttatcatagagcaa
gaaattgcaaaacttggggctaagtccataagagcatcagacctcctttataaggatgag
agtaaagacttgacaccaatattgtacattgttggccatccagaagatatcacacagcca
tctattttagaagaagtttctcgacttaacagacggacattcattgttgtggacgaagct
cacttggtgcctcagtggggggaagaattcagaccaatgtttagaaacatctgcaatttg
aagtccattaactcacatcttacatttatcttagcccttacagccactgcttccgttaaa
gttcaaaaatctatagcttcacatctcaccatgaagaagccagtttttctcagatcatta
cctgttcttaacagcaacattaagatgactattcaagagcgtccttcttcaactggtgga
aataacagagtccattctgcatatgactacattttcaaacctgtgaattcacaaattatt
gaggacttaaaaagcaacaaggaggttaaagttgtgttggccactgttgctctgggaatg
ggtgccgaccttcgaaatgtgaagcatgtaattcatgctggcccaccaaccagtccagaa
gtctatgtacaagaggttggacgagctggaagagatggccaggcagcagaagccaagtta
tatttcaataactctgatctagcagagaagcctattgataacagtatgatagagttcatt
agatcaaagtcatgcaggagacagcatctatctgcatattttgatgcaccctttgaaagt
gtggataactgttgcgatgtttgttgtaaggaaggagcaaatgttattggttttaaggtt
ccttcgctggaacaaaggcattatgttagactttctcttcaggcatacataaatgccgac
ccttcaggagagttaggatttattatgtctgaagaaaaagtccagattattgttgattgt
tttgaattcattaaagatgaatcatatctttctaaattgctaaattcaagtgttcctgag
tcagtttctagttcactttttgctatcttatcatcatttcaaaatgactga
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