Coffea arabica (coffee): 113697183
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Entry
113697183 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP93A-like
KO
K14309
nuclear pore complex protein Nup93
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113697183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113697183
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113697183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_14
TPR_2
TPR_12
PrmA
TPR_1
Motif
Other DBs
NCBI-GeneID:
113697183
NCBI-ProteinID:
XP_027072476
UniProt:
A0A6P6T3I1
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Position
6e:complement(16746867..16757352)
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AA seq
863 aa
AA seq
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MASDADMGSWNDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALSKKLKAKTLRTEAPSQS
IAATRLLAREGINAEQLARDLKSFELKTTYEDVFPAEATTVEEYLQQVHEMAMVSAVQEA
QKDNLRSFSDYMMTVLEEDWQKEKRDFLQSLGRISRLPRINVMDSGTGSVRQGQIVTLTS
SPHVSSGPSTMELAPLANKPIVEKKAAAYGEVVKDLNSARERGSSFKPATAFKLAYESLG
IDTSGGKSVGMQKMWNLVLTLMNEDSTPKPNVSRKLSLVMGARHHLEWGHEKYVLDTIQS
HPAQASLGGAVDNLQRIRAFLRIRLRDYGVLDFDADDARRQPPIDTTWQQIYFCLRTGYY
DKAQEVAQSSRVAHHFAPLLTEWIASGSLVSPRTVAAASEECEKLLRSGDRVGRASYDKK
KLVLYAIISGSRRLIDRLLREQPTLFNTIEDFLWFKLSAIHEWSDGSSSAVLNEGFSPYT
LEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKDIGDEGYGIDSVHIN
IVFADHEVLSEGAGAAQKFGVMDAFAEASSIIRQYGSAYLRNGDLSMALEYYAQAAAAVG
GGELSWTGRGSIDQQRQRTLMLKQLFTELLLHDGGIYLLLGPRGTGEEGQLGRFFTDGKT
RQQFLLEAARQCQDTGLYDKSIEIQKRVGAFSGALETVNKCLSEAICALSLGRLDGESRT
SGLIHSGNDILEAFKYHPEISPQERENVMEQQTVLRQLEAILCVHKLARVGHYLDALREV
AKLPFLPLDPRAPDFASDVFNNLSPYVQTCVPDLLRVALHCLDNVKDTDGSLRALRTKIA
NFLANNVNRNWPSDLYEKVARSL
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgcagacatgggtagctggaatgatcttctccactcgtcctcgaagcta
ctcgaacaagccgctccttccgcccagttccctcctcttcagaggaatttggaccagtta
gaagcattgtcaaagaagctcaaggcaaaaaccctaagaactgaagctccttcacaatct
attgccgcgactaggttattagcgcgagaggggataaatgcagagcaacttgcgcgcgat
ctcaagtcatttgagctaaagacaacatatgaagatgttttccccgcagaagcaacaaca
gttgaagaatatttacaacaggtccatgagatggcaatggtgtcagctgtacaggaagct
cagaaggataatcttagaagtttcagcgactacatgatgacagttttggaggaggactgg
caaaaagaaaaacgagacttcctccaaagtctgggtcggatttcgaggttgcccagaatc
aatgtgatggattcaggcactggttcagttcgtcaaggtcaaatagtgacactaacttcc
agtcctcatgtttcatctggtccatctaccatggagcttgcaccgttggctaacaagccc
attgttgagaaaaaagctgcagcctatggagaagttgtgaaggacctcaacagtgccaga
gagcgtggttcttctttcaagcctgctacagctttcaagcttgcatatgagagtttaggc
attgatacatctggaggcaaatcagttggcatgcagaaaatgtggaaccttgttttgaca
ctgatgaatgaggattcaactccaaaaccaaatgtttcaaggaaactatcattggtaatg
ggagctagacaccaccttgaatgggggcatgaaaaatatgtcctagatacaatacagagt
catcctgcacaggcttctcttggtggagctgttgataatttgcagcgaattcgagccttc
ctgaggattcgtttaagggattatggtgtccttgactttgatgcggatgatgctcgtaga
cagcctcccattgataccacttggcagcagatatacttttgcttgagaactgggtactat
gataaagcgcaagaagttgcccaatcatctcgtgttgcacaccactttgctcctctgctc
actgagtggattgcctctggcagtctcgtatcgcctaggactgtggctgctgcctctgaa
gagtgtgaaaaattgttgaggagtggtgatagagttggccgagcttcatatgacaagaaa
aaattagttctgtatgccatcatatctggttctcgcaggctgatagacagactgcttaga
gagcaacccacacttttcaataccatagaggatttcttgtggttcaagttgtctgctata
catgaatggtctgatggttcatcttctgctgttcttaatgagggattctcaccctacact
ttggaagatttacaggcttacctaaataagtttgaaccttcatattatacaaagaatgga
aaggatcctctggtgtatccatatgttttattgttgagcattcagctgcttccagcagtc
ctttatttgtccaaggatataggagatgaaggatatggcattgattctgtccacataaat
atagtattcgctgaccatgaggtcctttctgaaggtgctggggctgctcaaaaatttgga
gtgatggatgcttttgcagaggcttctagcataattaggcagtatggatctgcttatcta
cggaacggtgacctgtcaatggcactagagtactatgcacaggctgctgctgcagtgggt
ggtggtgagctttcatggactggaagaggtagtatagatcagcagcggcagaggaccttg
atgttgaagcaactttttacagaacttttattacatgatggtggtatttatcttctgctc
ggaccaagaggtactggagaagaaggtcaacttggcagatttttcactgatggaaagaca
aggcaacagtttctgcttgaggctgcgcggcagtgtcaggatactgggctgtatgacaaa
tccatagagattcaaaagagagttggggcattctctggagctctggagacagtcaacaag
tgcctgtctgaagcaatttgtgccctatcacttggtagattggatggtgagagcaggact
tctgggctcattcattccggaaatgatattttggaggcatttaagtatcatccagagatc
agtcctcaggagcgagagaatgttatggagcagcaaactgtgttaagacagcttgaggca
atcttgtgtgttcataagcttgcgagggtgggacattatttagatgctttgagggaggta
gcaaaacttccatttcttcctcttgatccccgagcaccggattttgcctctgacgtattt
aataatctatccccttatgtccaaacttgtgtgcctgaccttctaagagttgctcttcat
tgtttggacaatgtcaaagatacagatggttcgcttcgtgccttgagaacgaagatagca
aacttccttgcaaataacgtgaacaggaactggcctagtgacttgtatgaaaaggttgcc
cgaagcttgtaa
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