Coffea arabica (coffee): 113704308
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Entry
113704308 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113704308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113704308
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113704308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
113704308
NCBI-ProteinID:
XP_027081926
UniProt:
A0A6P6TW33
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Position
8e:36183738..36190360
Genome browser
AA seq
1088 aa
AA seq
DB search
MEENKSTVAKRTRAQTKCQLKKMIDEYYEKKPKEKKGDSEKAHDFDAMNATEGKRREELE
SSKVRRNDIGMVRINSTSNDEEQKGENVNRNIFKRKRKGAVEKFFNDDESSGSDVRILGE
EEVVEEVNLKEFNRMRRRRRETVYSCKNDDGGNGSSVEILQEQESWSSEEGADDSDKDYS
EEESGSSDTQSNHWGYCSKDNLEGGIGKDDGKMSPSGRYYIKEKEYSEDVEILGKSMEDN
GKEDSVGGNVSSESSLRKRKVHGNLKDGEVVTSKLSCLRPRLHSTPKSRKQESGLRTSRK
CCLRVSDSESSHFSGEDSDSSDQVPKKKKEGSRISKLSKRRGRVLREVDYVNILLGSMFK
DDEQTKQNLFPFEDNGPIHTLLLKFRFDDEDPAPPEKEGWQKEIDNLFTEMEMCLTLPDS
DFTESSMDGTHHVTATAKSQAELCQLGEHQLILEEPIGIVCKYCQIVYMEMKDIFPVLKK
ETSHRRDWVDLCRGDCSGIHELHFGELASRNYYTSIDAEGSVLDLIPNDIRMSMYSHQLD
GFVFLWKNIVGETCIEKLKTELSDDGRGAIISHAPGTGKTCLTIVFILSLLKMYPMCRPV
IIAPRSMLLTWENEFRKWGSRIPFHNFNSKDLSGNELKTDAEFLRRVGSRMTKLYSWTKD
KSVLGISYKLFEQIASGRKGKGSDERLGEIFLQLPGLVVLDEGHTPRNQQSLVWKVLTGV
KTKRKIILSGTPFQNNFDELYNTFCLVNPKFSGSITSESCNRRWQQKSNVEKERWISLTN
AIHKKSDNVVEELKAMIDPFVHVHRGSILEENLPGLKDTLVILRPTDEQKDILRLISDDW
SRFDQVHLVSLISVHPSLAAFSKRFSAHKDRLGVLRCSPYAGVKTKFAIELIRLCDASHE
KVLVFSEFIHPLRFIMQQLMDQLKWREGIEMLYMDGKRDEKNRQSSISSLNDPSSKVKVL
FASTKACSEGINLSGASRVVLLDVVWNPSVERQAISRAYRLGQKKLVYVYHLITSGTLEV
EKYAQQANKDRLSELVFSSRDRQSNKSRISSVFEDKILEGMLDNKMLNDIFENVINQPKE
SNVFANFN
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaataagagtactgtagcaaagaggacaagggctcaaacaaagtgtcaattg
aagaaaatgattgatgaatactatgagaagaagccgaaggagaagaaaggggatagtgag
aaagcccatgactttgatgcaatgaacgcaactgaggggaaaaggagggaagaattggag
tcaagtaaagtcagaagaaatgacataggaatggttagaattaacagcactagcaatgat
gaagagcaaaaaggggaaaatgtcaaccgaaatatcttcaagagaaagaggaagggagct
gttgaaaagttttttaatgatgatgagagtagtggaagtgatgttaggattttgggggaa
gaggaagtggtggaagaagtgaacttgaaggaatttaataggatgaggaggaggaggaga
gaaactgtttacagctgtaagaatgatgatgggggaaatggaagtagtgttgagattttg
caggaacaggaatcatggagctctgaagagggtgctgatgattctgataaagactatagt
gaggaagaatcaggaagctctgatacgcaatcaaaccattggggttattgtagcaaggat
aaccttgaaggagggatagggaaagatgatggcaagatgagtccatctggaagatattat
atcaaggaaaaagagtacagtgaggatgttgagattcttggaaagagcatggaggataat
ggaaaggaagattcagtgggagggaatgtcagcagtgagagttctttgagaaaaagaaag
gtacatggtaacctgaaggatggtgaagtggtgacaagtaagttatcgtgtctgagacca
cggcttcattcaactcccaagtccagaaaacaggaatccggacttagaacatcaagaaag
tgctgccttcgtgtttctgacagtgaaagttctcatttttcaggtgaggattctgattca
tcagatcaggtgccaaagaagaaaaaggaaggtagtaggatatctaagctctctaagaga
agaggaagggtgttaagagaggtggattatgtgaatattcttctggggtccatgttcaag
gatgatgagcagacaaagcaaaatctatttccttttgaagacaatggtcctattcatacg
ctgctgttaaaattcagatttgatgatgaggatccagccccacctgagaaagaaggctgg
cagaaagaaattgacaacctttttactgagatggaaatgtgcctcacgttacctgattct
gactttactgaatcatccatggatggcacgcatcatgtcactgctacggcaaagagccaa
gcagaattatgtcagttaggggaacatcagctgattcttgaagaaccaattggaatcgta
tgcaaatattgtcaaattgtgtatatggaaatgaaggacatttttcctgttctgaaaaag
gagacttcacacagacgggattgggttgacctttgcagaggtgattgctctggtattcat
gagcttcattttggtgagttagcctctcgaaactactacacctccattgatgctgaaggc
tctgtattggatcttattcccaatgatattaggatgtcaatgtatagtcatcaactggat
ggatttgtcttcttgtggaaaaacatagtaggagaaacttgtattgagaagctgaaaact
gaactgtcggatgatggaagaggagccataatatcacatgcccctggcaccgggaagacc
tgcctgacaattgtttttattctgtccttgttaaaaatgtatccaatgtgccggcctgtg
attatagctcctagaagcatgctgcttacctgggaaaatgagttccgaaaatggggatct
agaattccttttcataactttaatagcaaggacttgtcaggaaatgaactcaaaactgat
gcagaatttcttcggagggttggaagtcgaatgacaaagctgtactcttggacaaaggat
aaaagtgttctaggaatcagttacaagttatttgagcagattgccagtggacggaaggga
aaaggaagtgatgaaagacttggggaaatctttcttcaactgcctggtcttgtggttctt
gacgaagggcacacacctcgcaatcaacagagtcttgtttggaaggttttgacaggagtt
aagacaaaaagaaagataatcctctctggaactccttttcagaataactttgacgagttg
tataatactttttgcctggtaaacccaaagttttctggttcaatcacttctgagagttgc
aacagaagatggcagcagaagagcaatgtggagaaagagagatggatttccttgaccaat
gccattcataagaaatctgacaatgtggtagaagagctcaaggctatgatagatcccttt
gtacatgtacacagaggttctatactagaagagaatctccctggtctgaaggacacactt
gttattttgcggccaactgatgagcagaaggacattcttcggcttatatcggatgattgg
agtaggtttgaccaagtacatttggtgtcactcatttctgtccacccatcattagctgct
ttcagtaaacgcttctctgcccacaaagatagactaggggtgctcagatgcagtccttac
gctggagtaaagacaaaatttgccattgagctcatccgattatgtgatgcatcacatgag
aaggttttagttttcagcgaatttattcatcctttgagattcataatgcaacagctgatg
gatcagttaaagtggagagaaggcatagagatgctgtatatggatggaaaacgggatgag
aagaatcgccagtcatcaattagttctctgaatgatccttccagtaaggtgaaagttctt
tttgcatccacaaaagcatgttctgaaggaataaatctgagtggggcatcaagagttgtt
ttgttagacgttgtttggaatccttcagttgaaaggcaagcaataagcagagcatatagg
cttggccaaaagaagcttgtctatgtttatcatttgataacctctgggaccttggaggtt
gaaaagtatgctcaacaggctaacaaagatcgcttgtctgaattggtattttcttctcga
gataggcaaagtaacaagtccagaatttcatccgttttcgaagacaaaatcttggaagga
atgcttgacaacaaaatgctgaatgatatctttgagaatgttattaaccagccaaaggaa
tcaaatgtatttgcaaacttcaattaa
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integrated database retrieval system
