Coffea arabica (coffee): 113706828
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Entry
113706828 CDS
T11342
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113706828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113706828
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113706828
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113706828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
AAA_24
DUF1611
SRPRB
ATP_bind_1
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
113706828
NCBI-ProteinID:
XP_027084657
UniProt:
A0A6P6U3L3
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All DBs
Position
8e:47642727..47649579
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AA seq
436 aa
AA seq
DB search
MAYVGGAAAAASGGPTSIRQVKLDKECELRIEVAETPFRLRLLTGTAEIFGTEIPPEIWL
SFPPRLKFAVFTWYGATIEMDGTTETDYTADETPMVSYVNVHAVLEGRRNRAKASPGDSD
ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATPIEM
PIDPVEGIPLEMPLVYFHGHPTPSANVDFYKVLVKELAQTLEKQFSGNAESRAAGMVINT
MGWIDGVGYDLLLHAIDAFSASVVLVLGQEKLCSMLKDVLKNKPNVDVVKLQKSGGVVSR
NPKVRQRARGGRIREYFYGLANDLSPHSNIANFSDLSIYRIGGGPQAPRSALPIGAEPTA
DPTRLVPVNINRDLLHLVLAVSYAKEPEQIISSNVAGFIYITDIDIQRRKITYLAPCHGE
LPGKYLIVGSLTWVET
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcatatgtaggtggagcggcagcagcagcatcaggtgggccgacatcaataagacaa
gtgaagttggataaagaatgtgagctcagaattgaagtggctgaaacgcctttccgtctt
cgccttctcactggaacagctgagatttttggcactgagatccctcctgaaatctggctt
tctttccctccaagactcaaatttgctgtttttacctggtatggagccacaattgaaatg
gatggtaccactgagacagattatacagcagatgagactcccatggttagttatgtgaat
gtgcatgcggtgctagagggacgaagaaatcgcgcaaaagcttcgccaggtgactctgat
gcctctcagggccccagggttattgttgtgggacctacagattctggaaaaagtactttg
tctaggatgcttctcagttgggcagctaaacaaggttggaaaccaacatttgttgatttg
gacataggccaaggatccataacaattcctggatgcgtagctgctacaccgattgagatg
ccaattgatccggttgaaggaatcccacttgagatgcctttggtatacttccatgggcat
ccaacacctagtgccaatgtagatttttacaaggttcttgtaaaggagcttgctcaaact
cttgagaaacagttttctgggaatgccgaatctagagcagcaggcatggtcatcaatacc
atgggatggatagatggtgttggttacgatttgctgctccatgcaattgatgcttttagt
gcctctgttgttctggtattgggtcaggagaaactctgcagcatgctcaaagatgtactg
aaaaacaagccaaatgttgatgtcgtgaaacttcaaaaatctggtggtgttgtgtcaagg
aacccaaaagtgcgccaaagagccaggggtggtaggataagggagtacttttatggtctg
gcaaatgatctttccccacattctaatattgctaactttagcgacttgtccatctatcga
attggtggtgggccacaagccccacgttcagctttgccaataggggctgagcctactgca
gaccctacaagattggttcctgttaacatcaacagagacttgctccatttggttcttgct
gtctcatatgcgaaagaaccagagcaaattatatcaagcaatgttgctgggttcatctat
atcacagacattgacattcagaggaggaaaattacatatctcgcaccatgtcatggagaa
cttccaggtaaatatttgatcgtggggagcctgacgtgggttgaaacctag
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