KEGG   Coffea arabica (coffee): 113711143
Entry
113711143         CDS       T11342                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
carb  Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:carb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:carb03009]
    113711143
Ribosome biogenesis [BR:carb03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    113711143
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd NBCH_WD40 EIF3I Beta-prop_EML Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_IP5PC_F Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_IFT122_1st WDR54 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_SCAP Beta-prop_BBS7 DUF5984
Other DBs
NCBI-GeneID: 113711143
NCBI-ProteinID: XP_027090118
UniProt: A0A6P6UI12
LinkDB
Position
10e:complement(3690627..3696178)
AA seq 459 aa
MEAELVLASSPTDAGISCWDLRSGTEHLRFRSCSSPAHGLTSVAGRFLASSQLRDSKSSS
GSIFYWSWNKPQPEVKSFPAEPINALASNCEGTYIVGGSVSGEIYLWEVATGRLLKRWHA
HYRAVTCLVFSDDQFLLISGAEDGSVRVWSLLMIFDDQRREEAKYLYEYSFSEHTLKVTD
VAAGYGGCNAIIVSSSEDRTCKVWSLSRGKLLRNIVFPSIIDAVVLDPGEHVFYAGGRDG
NIYIAALNAQVNSSSNYGFHIIGSLSEHNKAITCLGLSMDGYLLVSGSEDGMVRVWDTRT
RNIFRVFRHAKGPVNNVLVIRQPSHCNPRTSMNFQAFSSRRHVLPSPLEKYSYSHDDNID
TKACINCQTYNNIADVPNISFQTMQNQIKELQQQGSSAATEMEMERLKLERKRSMQMVQQ
WKKMYENLHQFCVSELLDGNEHESASRHNIRTEDAGNKV
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggaagccgagctggtgcttgcttcatcgccgaccgacgcaggcatcagctgctgggac
cttcgttcaggcaccgagcacctccgctttcgctcttgctcttctcctgcccacggtctc
acctcggtcgccggccgctttcttgcctcttctcagctccgtgattccaagtcctcttcc
ggctccatcttctactggtcctggaataagcctcagccggaagtcaaaagctttcctgcc
gaacctatcaacgctcttgcttctaactgtgaaggcacttacatagttggaggcagcgtt
tctggagaaatatatttatgggaggttgcaactggtagattgctaaagaggtggcacgct
cattatagggcagttacctgcttagtgttctctgatgatcagttccttttgatttctggg
gcagaggatggctctgttcgtgtgtggtcgctcctcatgatatttgatgatcaacggagg
gaggaagcaaaatatctgtacgagtatagtttctctgagcatacgttaaaagtcactgat
gttgcggctggttatggaggatgcaatgctattatcgtgtcttcttcagaggataggact
tgcaaggtatggagcttatctagggggaaactgttgcggaatattgttttcccatcaata
attgacgcagttgtattggatcctggtgagcatgtcttctatgctggtggaagagatggt
aatatatacattgctgcacttaatgctcaagtcaacagtagcagcaattatgggttccat
atcattgggtcattaagtgaacacaataaagctataacttgcttaggattgagtatggat
ggatacctattggtatctggatcagaggatgggatggttcgagtttgggacactagaacc
cggaacatttttcgtgtctttcgacatgcaaaaggccctgttaataatgtccttgtcatt
agacagccatcacactgcaatccacggacatcaatgaatttccaggctttctcatcaagg
agacatgtactaccatcaccactagagaagtattcttattcacatgatgacaatatcgac
acgaaggcttgcatcaattgccagacatacaataacattgcagatgttccaaatattagt
tttcaaaccatgcagaatcaaataaaagaacttcagcaacaaggttcttctgctgctact
gaaatggagatggaaaggctaaagcttgagcgcaaaagatccatgcaaatggtccagcaa
tggaagaaaatgtatgaaaatttacatcagttctgtgtatctgagcttttggatggaaat
gagcatgagagtgccagcagacacaatattaggacagaggatgcaggaaataaagtctga

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