Coffea arabica (coffee): 113715200
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Entry
113715200 CDS
T11342
Name
(RefSeq) UV-stimulated scaffold protein A homolog isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
carb Coffea arabica (coffee)
Pathway
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113715200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113715200
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
113715200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
TIMELESS_C
Motif
Other DBs
NCBI-GeneID:
113715200
NCBI-ProteinID:
XP_027095242
UniProt:
A0A6P6V073
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Position
10c:49615155..49620852
Genome browser
AA seq
674 aa
AA seq
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MRTILVLSKMKTSKMEEEAREEGEGGAEGKVVVVGLIEKATNSTRPEVDPRLLKAIKSAV
RYSDSELRLAAQTLTSLMKRDHSQVRYLALLIIDELFMRSKLFRTLLVENLDQLLTLSVG
FRRNLPLPAPAAVASVLRSKAIEFLEKWNTSFGIHYRQLRLGYDYLKNTLRYQFPNLQAN
AARIQQERREKEIRTKEILLKKFESLKENLPSIRDDIQSTVDEISECLDIIQNKDDNVPL
VPVDEEEIEEFHNAELRQIRLDSLREGEKLQENSENKVIFDALRELYKVLVTKHLAAVQE
WTSVLIRVEGADSRFRDNTLKELIDIRNHLQSVKTKCEVSGCALPKSTTSEEEDIWEEGT
LESHANGESFIEEKKSELCVASTSSKFEGKASEGSKSKLVAAKKLDGGYSHMEPNPVRSK
LMAEAPVLKWGSFLDNWGSNQDVLANQRGLEIENHWGRVDYDAVIPAEKIAELNLQAIVY
KEEPVEIQPCRAPLKKGGLCPRKDLRVCPFHGPIIPRDDEGRPINLTSSPELGGGNSSGE
EMSPDLVEKLVKQAVRNVRERDKEAAKKRYHDKQDLKRAKLAKVREHNEAVLRDAALAST
SRSSYIGEDTEAVSGPRSLLRNKRDTLASMLKRKETTKDRLAQKLLSTRAKDATVRQLTV
EEESNYKEAFPNQW
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgcgtactattctagtcctaagcaaaatgaaaacctcaaaaatggaggaggaggcgcgg
gaggaaggggaggggggagcagaagggaaggtggtggtggtcggtttgatagaaaaagct
acgaattctacgaggccagaagtggaccctcgccttctcaaagccattaaatcagctgtt
cgttactccgattccgagctccgactcgccgcccaaaccctaacgtccctcatgaaacgc
gaccactctcaggtacgataccttgcacttctcataatagatgagttgttcatgcggtca
aagcttttcagaactcttcttgttgagaacctagatcagttgctcacattaagtgtagga
ttcaggaggaatctgccgctaccagctcctgctgctgttgcatctgttctgcgttcaaag
gctattgagttcttggagaaatggaacacatcatttggtatacattacaggcagctgagg
ctagggtatgactatctgaagaatacccttcgctatcaattccctaatttgcaagcaaat
gctgctcggattcagcaggaaaggagggaaaaagagattaggacaaaagaaatattgctg
aagaagtttgaaagcttgaaggaaaatctgccatcaatcagagatgatattcagtcaaca
gttgatgaaattagtgaatgtctggacattattcaaaataaagatgataatgtgcctttg
gttcctgtggatgaagaggaaatagaagaattccacaatgccgaactgcgacaaattcgt
ctagactccttgagagaaggtgaaaagcttcaagagaatagtgagaataaggtaattttt
gatgcattgagagaactatacaaagttctagtaacaaagcatttggctgcagtgcaagaa
tggacctctgtcctcataagggtggaaggggcagatagcaggttccgagacaacacattg
aaggagctcatagatattcgaaatcaccttcaatcggtgaagacaaaatgtgaagtttca
ggttgtgctcttcctaaaagtacaacttctgaggaagaagatatttgggaagagggtact
ctggaatcacatgcaaatggagaatcatttattgaagagaaaaagagcgagttatgtgtt
gcatccacttccagtaagtttgaaggcaaagcttctgaaggcagcaaatctaagttggta
gctgcgaagaaactggatggtggctacagtcatatggaacctaatcctgtgaggagtaag
ctaatggctgaagccccagttctgaagtggggttctttcttggataactggggctcaaac
caagatgtattggctaatcagaggggtttagaaattgaaaatcattggggtagggtagac
tatgatgcagtgattccggcagaaaaaattgctgagttgaatcttcaggcaattgtttac
aaagaggaacctgttgagatccaaccatgtcgggccccattgaagaaggggggcctttgt
ccaagaaaagacttgagagtttgtccatttcatggaccaatcattcctcgggatgatgaa
gggagaccaatcaatctgacttcaagtcctgagttggggggcggtaactcctcaggggaa
gagatgagtcctgatttagttgagaagttagtcaagcaggctgtgagaaatgttcgtgag
agagacaaagaggcagctaagaagagataccatgacaaacaggatttgaaaagagcaaag
cttgcaaaagttagagaacacaatgaagcagttctacgtgatgctgcacttgcttcaact
tcaagatcttcatatattggtgaggatacagaggcagtcagcggcccaagatctttgctt
agaaacaagagagacactctcgcatccatgctgaaaaggaaagaaactactaaagacagg
ctagcccagaagctactgagtacccgtgctaaggatgctacagtaagacagttaactgtg
gaagaggagtcaaattacaaggaagcatttccaaaccaatggtag
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