Coffea arabica (coffee): 113728736
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Entry
113728736 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113728736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113728736
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113728736
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113728736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
TetR_C_8
Motif
Other DBs
NCBI-GeneID:
113728736
NCBI-ProteinID:
XP_027108902
UniProt:
A0A6P6W454
LinkDB
All DBs
Position
2c:22336878..22360096
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPFALTASTQIRYLLQSLNASNSDAVLQELCQFIAYGVEGSILLLQTCLDHLNIHGKDF
KNVQFEPVFGSVFRYILDKPNFSTVFFQSVKNTINEEFLESLCNALHLSASERIAVGLAL
SDSENLDIRLYGKNFCMAQIVELCANQKPVDSVEQIQQILMFLHRSEGLSKHVDAFMRML
SLVQLKEGTQFILAPLFSDELREANFFRNLNFSNQNDEDDFDAVLAEMEKEMCMADILKE
LGYGCTFSVSVCKEMLSLFSPLTEITVARMLGTISHTYTGLEHNQNVFSTFRSALGSSSS
SDMPTLNSWNPDVLIDSIKELAPEINWTAVIENLDHEGFYVPSEAAFSFFMSVYHRACQD
PFPLHAVCGSVWMNTEGQLSFLKYAVAVPPEVFTFAHSGRQLAYLDAVNGHKFQLGHANH
AWLCLDLLEVLCQLAERGHASTVRSILEYPLKQYPEILLLGMAHVNTAYNLIQNEVSSAV
FSVILKNSAGNSMLLHLWHINPSMLLRGFADALNADQENVNRVLDACLELKILSPVLDMI
PSSFAIRLAAVASRKEPIDLEKWLTANLMTYKDAFYEECIRFLKEVQLAAQEVSANHFQP
SGAMWNICSETSSTFLKVLQSHTDLLTSGHLPEELEKLHVLYMHANSRQKNGSNADPSST
DGFAADIESEANSYFQQMFSGQLTIDAMIQMLARFKESPEKREQSIFECMIASLFEECKF
FSKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFAFGTKALEQF
VDRLIEWPQYCNHILQISHLRANHSELVAFIERALARISAAHSESDALHGAAGDQHGAIQ
ATSPNMEMSSSSFPLVGSSHSQQGLQVSSAIQLPQRQQNQLDERKTSGSLPNFLKPALSS
AGQAAGPLASDTSGIQKSQNAVSALAAHTSSPGFVRASRAITSARFGSALNIETLVAAAE
RRETPIEAPASEIQDKISFIINNLSAANVEAKAKEFTEILKDQYYPWFAQYMVMKRASIE
PNFHDLYLKFLEKVNSKQLTKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKI
TIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPSQGSIAYRPPNPWTMGILG
LLVEIYAMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDKVREVEGNPDFSNKDVGSS
QQQMGEVKSSMIPAINQVELPLEVTGPAHPGGHSRVLSQYGAPAPMHLSSGALAEDEKLA
ALGLSDQLPSAQSLLQGQSPFSVNQQLAAPASNIEQQVIVNSKLHTLGLHLHFQSVLPIA
MDRAIKEIVSNIKQRSVSIATQTTKELVLKDYAMETDETRIRNAAHLMVASLAGSLAHVT
CKEPLRASISSQLRNSLQGLNIASELLEQAVLLVTNDNLDLGCALIEQAATEKAIQTIDG
EIAQQLAIRRKHREGVGPTFFDASLYTQGHMGVLPEALRPKPGRLSHSQQRVYEDFVRLP
WQNQSTQSSNALPVGPLVSSTSSSVSRGYMQASGQLNAGVYSSGAVSSGMGSVPQPLDVT
SDDLDTSLTQIQSVSSAHVGLADSVSPRNVESENVVASFSSVPTELQSVESVVKEPGTAM
QQLNQSSASERSGSSVPEPLSTTGDALDKYQVFAEKLENLLTGDAKEAEIQGVIAEVPAI
ILRCISRDEAALAVAQKAFKALYENASNMAHVSAHLAILAAMRDVSKLVVKELTSWVIYS
EEERKFNKDITVGLVRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLIQTLVIGDTRVI
SELHNLVDALAKLAARPGSPESLQQLVEIVKNPSTAALSGIAIGKDDATRQVKDKKGAVL
SAASREEYGAGADSVEPDPAGFREQVSMLFAEWYRICELPGANDGACAHYVLQLQHNGLL
KGDDTSDRFFRRLTDLSVSHCLTSEVIGSGPSQSHQTQPLSFLAIDIYAKLVYSVLKFCS
VDQGSSKLFLLPKVLAVTVKFIQKDAEEKKTSFNPRPYFRLFINWILDLCSLEPVFDGAN
FQVLTALANAFHALQPLKVPGFSFVWLELVSHRSFMPKLLAGNAQKGWPYIQRLLVDMFQ
FMEPFLRNAELGEPIHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIIL
SAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKNDVDEYLKTRQQGST
FLTDLKQKLLLSPNDAARAGTRYNAPLINSLVLYVGMQAIQQLQARTPPHAQSMASSVPL
AVYLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEM
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRTFTRCAPEIEKLFESVSRS
CGGPKPVDESVVSGGIPDNMH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgtttgctttgaccgcgtctactcagattcggtatctgctgcagagcttgaac
gcctccaactccgatgccgtcctccaagaactctgtcagttcattgcatatggagttgaa
ggaagcatattgttacttcagacatgcttggatcatctaaatattcatgggaaagatttt
aagaatgtgcaatttgaaccagtgtttggttcagtgtttagatatatcctggataagccc
aatttcagcacagtgttctttcaatctgtaaagaatacaatcaatgaagaatttctggaa
agtctttgtaatgctttgcacctctcagcatctgagaggattgcagttggtcttgctctg
tcagattcagagaacctggacattagattgtatggaaaaaacttctgcatggctcagatt
gtagaattatgtgccaatcaaaagcctgttgactctgtggagcaaattcagcagattctg
atgttccttcatcggtctgaaggcctttcaaagcatgtagatgcatttatgcggatgtta
tctcttgtacaattgaaggagggcacacagttcatcttagctccactcttttcagacgaa
cttcgtgaggctaacttcttcaggaacttgaatttttccaatcaaaatgatgaggatgat
tttgatgctgtcctagctgaaatggagaaggaaatgtgtatggctgatatattgaaggaa
ttgggatatggttgcacatttagcgtttcagtatgcaaagagatgttgtctcttttctca
ccacttactgagatcactgttgctaggatgcttggtacaatttcccatacctatactggc
cttgagcacaatcaaaatgttttctcaacattccgttcagcccttggtagcagcagttca
tctgatatgcctactttgaactcttggaatcccgatgtcctcatagattcaatcaaggag
cttgctcctgaaattaactggacagctgttattgaaaacctggatcatgagggattttat
gtccctagtgaggctgctttttcatttttcatgtctgtttatcatcgtgcatgccaggat
ccctttcctcttcatgctgtttgtggctctgtttggatgaatactgagggccagctctct
tttcttaagtatgctgttgcagtacctcctgaagtgtttacttttgcacattctggcagg
cagttggcttatctagatgctgtgaatggccacaagtttcaacttggacatgcaaatcat
gcgtggttatgccttgatcttttggaggttctgtgccagctagctgagaggggtcatgca
agtactgtgcgatccattcttgagtatcctctaaagcagtatccagaaatcttgcttctt
gggatggctcatgttaatactgcatataatctcatccagaatgaagtgtcttcagctgtg
ttctctgtgatactcaagaattcagcagggaatagtatgcttcttcatttgtggcatatc
aaccctagcatgctgttgcggggatttgcagatgctcttaatgctgaccaggagaatgta
aatagggttttggatgcctgcctggagctgaagattctatctccggtgctggatatgatt
ccttcttcttttgctattagacttgctgcggttgcttctagaaaggaacctattgaccta
gagaagtggttgactgcgaacttaatgacatacaaggatgctttctatgaggagtgcata
agatttctaaaggaggttcagcttgctgctcaggaagtttctgctaaccacttccaacct
tctggtgccatgtggaatatttgttcagagacttcttctaccttcttaaaggtccttcaa
tcgcatacagacctgttaacctcaggccacttgcctgaagaattggagaaattgcatgtg
ttatatatgcatgccaattctagacagaaaaacggtagcaatgctgatccgtcatcaact
gatggttttgctgctgacattgaatctgaagcaaactcttatttccagcaaatgttttct
ggtcaactgaccattgatgcaatgattcaaatgcttgctcgtttcaaagaatctccagag
aaaagggaacaatcaattttcgagtgcatgatcgctagtttatttgaggagtgcaagttt
ttctccaagtatcctgaaaggcagctcaagattgctgcagttctttttggatctcttatc
aagcatcaattggtgacgcatctcacgcttggtattgctttgagggctgttttggatgca
ttgcgcaaacctgcagattcgaaaatgtttgcctttgggactaaggctctggaacagttt
gtggatcgcctgattgagtggccacagtactgcaatcatatcttacaaatatctcatcta
cgtgctaatcattcagaacttgttgcttttattgagagggcgcttgcccgaatctctgcc
gcacattcagaatctgatgcacttcatggtgctgctggtgatcaacatggtgctattcag
gcaacttcccctaacatggagatgtcaagctcatcatttcccttggttggatctagtcat
tcacaacaaggcctgcaagtttcttctgcaatccagctcccacagaggcagcaaaatcaa
ttagacgagcggaaaacctctggaagcctgcccaatttcttaaaacctgctttatcctct
gcaggccaagctgctggtcccctagcaagtgatacttctggcattcagaagtcacaaaat
gcagttagtgccttggctgcacacacttcctctcctggttttgttcgtgcatcacgtgcc
attacctcagcaaggtttggctctgctttaaatattgaaacacttgttgctgctgcagag
agaagagaaactcccatagaggctccagcatcagagattcaggataaaatatcatttatt
atcaataatctatctgctgcaaatgttgaagctaaagcgaaagaatttactgagatatta
aaagatcaatactatccctggtttgctcagtatatggtgatgaaaagggcgagcattgag
ccaaattttcatgacttgtacttgaagtttctggagaaagtgaattcaaagcaattaacc
aaagagattgtgcaagcgacctatgagaattgcaaggttcttttaggatcagagcttata
aaatcaagttcggaagagcgttcgttgctaaaaaatcttgggagctggcttggaaagatc
accattggcaggaatcaagtattgagggcacgggagattgatcccaaatccttgattata
gaggcatatgagaaaggattgatgattgcagtcattcccttcacctccaaggttctggaa
ccaagccaaggtagcatagcatatcgaccccctaacccatggaccatgggtattcttgga
ttgcttgtagagatttatgctatgccaaatttgaagatgaacctaaagtttgacattgag
gtgttgttcaagaaccttggtgtggatatgaaagacgtaactcctacttctctccttaag
gataaggtcagagaagttgaaggaaaccctgatttttccaacaaggatgtcggatcttcc
caacaacagatgggtgaagtcaaatctagcatgatacccgcaataaatcaagttgagctg
cctcttgaggttactggtccagcacatccaggcggacactcacgcgtattatctcagtat
ggtgcccctgctcctatgcatctttcatctggggcattggcagaagatgagaagttagct
gctctaggattatctgatcagcttccttctgcacaaagtcttctacaggggcagtcacca
ttctctgtcaatcagcagcttgctgcaccagcatctaacattgagcaacaagtgattgtc
aattcaaagcttcatacattaggcttgcacttgcactttcagagtgtacttccaatagcg
atggatagagctatcaaggagatagtttccaacattaaacaacgaagtgtttctattgca
actcaaacaactaaagaacttgttttaaaggactatgctatggagacagatgagacacgc
atacgtaatgcagcacatcttatggttgcaagtttagcaggaagtttagctcatgttact
tgcaaggaacccttgcgagcctcaatatcaagtcagctcaggaattcactgcagggcctg
aatattgcaagtgaactccttgaacaagctgttttacttgtgaccaatgacaatcttgac
ctgggttgtgcactgattgaacaagctgccacagagaaggcaatacaaaccattgatggg
gaaatagctcagcagctagctataagaaggaagcatagagagggcgttggtccaacattt
tttgatgcaagcctctatacgcaaggtcatatgggtgttttgcctgaagctcttcgtcct
aaaccaggccgcctgtcccattctcagcagcgagtttatgaggattttgtgcgtttaccc
tggcaaaatcaatctacccagagctcaaatgcattgcctgttggccctctagtatcatct
acaagcagtagtgtttcgcggggatacatgcaagcttcagggcaattaaatgctggagtt
tactcttctggagcagtaagctcaggaatgggttctgttccacagcccttggatgttacg
tccgatgatctggatacaagtttgactcagattcaaagtgtttcatcagctcatgttggg
ttggctgacagtgtcagtccacgcaatgttgaaagtgaaaatgtagttgcatcattttct
tcagtgcctactgaactacagtcagttgaatctgttgtgaaagaaccaggaacagcaatg
cagcaactcaatcagtcatcagcttcagagcgctctggaagcagtgtaccagaaccatta
tctaccactggtgatgcactggataagtatcaggtttttgctgagaagcttgaaaatctg
ttgactggtgatgccaaagaagcagagattcagggagtaattgctgaagttccagcaata
attttaagatgtataagtcgagatgaagctgcattggctgtggctcaaaaggctttcaag
gctttgtatgaaaatgcatcaaatatggcacatgtcagtgctcatcttgctatcttggct
gccatgcgtgatgtcagcaagcttgttgttaaggagctcactagttgggtgatttactct
gaagaggagcgcaagtttaacaaagatataacagttggtctcgtacgaagtgaactacta
aaccttgctgagtacaatgtgcatatggccaaacttattgatggtggaaggaataaggct
gctactgaatttgctatttctcttattcaaaccttggttattggtgataccagagtcata
tcagagctgcataacctggttgatgcattggctaagcttgctgctagaccaggatctccc
gagtctttacagcagcttgttgagattgtgaagaatccatctacagctgctttgtctggt
attgctattgggaaggatgatgccacccgacaggtcaaagacaaaaagggggcagtgctc
tctgcagcaagcagggaagagtatggtgcaggagcagattctgttgaaccagatcctgct
ggctttcgtgagcaggtttccatgctatttgcggagtggtatcgaatttgtgaacttcct
ggggctaatgatggagcttgtgcacattatgttttacaattacagcacaatggcctactt
aaaggagatgatacctcagatcgctttttccgccgcctaacagatctttcagtttcacat
tgcctaacttctgaggtgattggatctggtccttcccaatcacatcaaacacaaccttta
tcattccttgctattgatatctacgccaaattagtatactcagttctgaagttttgttct
gtagaccagggatctagcaaattatttcttcttcctaaggttcttgcggtgaccgtgaag
ttcattcagaaggatgctgaggagaagaaaacatcctttaatccaagaccatattttagg
ctcttcattaactggatcttggatttgtgttctctggaacctgtttttgatggcgcgaac
tttcaggtattgactgctttagcaaatgccttccatgctctccagccccttaaagttcca
gggttcagctttgtgtggcttgagctggtgagtcatagaagcttcatgccaaaattactt
gccggaaacgctcagaaagggtggccatacatccagcgcctcttagttgacatgtttcag
ttcatggagccatttttgagaaatgctgagcttggagaaccgatccattttctctataaa
gggacactaagggtgttgctggtgctgcttcatgattttcccgaattcctatgtgattat
cactttagcttctgtgatgtcatccctcctagttgcatacagatgcgaaacattatcctg
agtgcatttcctcgcaatatgaggctacctgatccctcaactccaaacttaaagattgat
cttctggcggagattagtcaatcaccacggattctatcggaggttgatgctgcacttaaa
gcaaagcagatgaagaatgatgtagatgaatacctaaagacaaggcaacaagggtctaca
tttctcactgatttaaagcagaaacttctgctttctccaaatgatgctgccagagctgga
actcgttacaatgcaccgctcatcaattcccttgtgctgtatgttgggatgcaggctata
cagcagctgcaggcaagaaccccacctcatgcacagtcaatggccagtagtgttccactt
gctgtttatctggttggtgctgctctggatatcttccagacattaataatggatctagac
actgagggacgttatctcttcttgaatgcggttgctaaccagttgcgttatccaaacaac
cacacacactacttctctttcatcttgctctacctatttgcagaatcaaaccaggagatg
attcaggagcaaatcactagggtattgttggagcgcctaattgtcaataggccacatcct
tggggtttgctgattacttttattgagcttattaagaatcctaggtacaacttctggagc
cgtactttcactagatgtgcaccagagattgagaaactctttgaatctgtttcgagatct
tgtggtggtcctaaacctgtcgatgaaagtgtagtttctggtgggatacctgacaacatg
cattaa
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integrated database retrieval system
