Coffea arabica (coffee): 140016120
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Entry
140016120 CDS
T11342
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140016120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140016120
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
140016120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_8
TPR_17
TPR_19
TPR_16
TPR_CcmH_CycH
TPR_9
TPR_12
TPR_20
TPR_7
BTAD
DUF6584
TPR_15
TPR_NPHP3
Ig_ZP2_N
GET4
DUF7017
Motif
Other DBs
NCBI-GeneID:
140016120
NCBI-ProteinID:
XP_071925446
UniProt:
A0ABM4W0Y0
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All DBs
Position
10c:complement(1570536..1586044)
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AA seq
1180 aa
AA seq
DB search
MDGGKDCEAVARRRHLEELLNSEPDDSSLHFKLGILLWEEGEESKAAEHFVTCAKLNPQE
AAAFRYLGDYYSRLDYDQSQNQRALKCYQRALLLDPDDSLSGEAICDLLDQQGKISLQFA
ICTQASNKSPTAFWAFRRLGFLQVHQKRWSEAVQKLQHAIRGYPTCADLWEALGLAYQRL
GMFTAAIKSYGRAIELEESRIFALIESGNISLMLGSFRKGVEHFRQALLISPENLAAHYG
LASSLLGLAKECINSGAFRWGASLLEEASEVIVSIMTLAGNISCIWKLHGDIKLFYAKCF
PWVDDGWGLKADQKSFSDSIISWKRICHLAAVSSSRSYQRALHLAPWQSNLYTDIAIASD
ITFFSKENHEEDLNSWSQAEKMCLGGLLLEGENNEFWVTLGCLSDHNALRQHAFIRGLQL
DVSLAVAWAYLGKLYRLEGERKLAQQAFDRARSIDPSLALPWAGMSADADIRNLKPDEAY
DCCLQAVQILPLAEFQIGLAKLGLYSGQMPSSEVFRAIRQALQRAPHYPESHNLNGLICE
ARSLYQSASASFRLARHAVSSFSGEVSKLYHKDISMNLVRSLCKAGSPNEAVEECELLKK
EGLLDLEGLQIYALCLWQLGKNDLALLTARTLAANILSMDSRKAAATISFISRLMYYISG
QDSVISSILKMPKDLFQSSKVSFIVSAIDALDCSDQLGPIVSHSHTSLMSSEEITSMHSL
IALGKLVKYVSDDRLGIQNGVDHLRKALHMYPHSGLIRNLLSYLLLFSKEWKDVHLATRC
FIVDSYDHQKEKVLKSSFEILGAGAVACYTKGRCNDEFSFSTSKEQCLFGTGIIQQLQKD
LHREPWNDRARYLLILTYVQKARKEGYPQHLCTIIERLICVALSDEFCSRQESSYEYQRF
QLLLCAAEVCLQFGNHIGCVRHAKSASELLLPDDSLFYAHILLCRAYAAQDNFVDMRKEY
TRCLELKTDYPIGWVCLKIIDCQYKLQTDGTFLAVGFEECSRDVKKSWNMWMAVGDLVHG
LVAIQTKDLLAAEKFLAQACSLAGDESCLFLCHGTICMQLAKQQCDARFLSLAVRSLQKA
RETSVMLPIVSLLLAQAEASLGSKMKWEKNLRDEWFSWPPGMRPAELYFQMHLLAKQERE
SSRSSSLIESSQSAQRWVLQAIHLNPSCLRYWKVLQTFTG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggatggggggaaagattgcgaagctgttgcaaggagaagacacttggaagagttatta
aactccgaaccagatgattcatccctccattttaaactcggaatattactgtgggaagag
ggagaagagtcaaaagcagcagagcattttgtaacttgcgcaaagctcaacccccaggaa
gctgctgctttcaggtatttgggtgattattactcgcgattggactacgaccagagccag
aaccagagggctctcaagtgctaccaacgagccctcctcctcgatcctgatgattccctt
tccggggaagctatctgtgatttgttggaccaacaaggtaaaatctccttgcagtttgcc
atctgcactcaagcttccaataagtccccgacagccttttgggcttttcgaagattggga
tttcttcaggtccatcaaaagagatggtctgaagctgtgcagaaacttcagcatgccatc
cgtggctatcccacctgtgccgatctctgggaggccttgggtctagcctaccagagactg
ggcatgttcactgctgcaatcaagtcatatggaagagctattgagttagaggagtcaaga
atctttgccttgattgaaagcggaaacatttccttgatgctaggttcttttagaaaggga
gttgagcattttaggcaagctttgttgatttcacctgaaaatttagctgcacattatggg
ctagcttcttctctacttggtttggctaaggaatgcataaattcaggtgcatttagatgg
ggagcttcactattggaggaggcttctgaagtaattgtatcgattatgacattagctggt
aacatatcatgtatctggaagctgcatggtgacattaagctattctatgccaaatgtttt
ccctgggtggatgatgggtggggcttaaaagctgaccaaaaaagtttcagcgactcaatc
atttcctggaaaagaatttgccatctagctgctgtatcttcatctcgttcttatcagcgg
gctctgcacttggcaccttggcaatctaatttgtacacagacattgccatagcatcagat
attactttcttttcaaaagagaatcacgaagaggacctgaactcttggtcacaagctgag
aagatgtgcttagggggcttattacttgagggagaaaataatgagttctgggtgacatta
ggatgtttatcagatcataatgccttgagacaacatgcttttattcgtgggctgcagttg
gatgtttcactggctgttgcttgggcgtaccttgggaagctctacaggctagagggtgaa
aggaaactggcacagcaagcatttgatcgtgctagaagcatagatccctcacttgcatta
ccttgggctggaatgtcagctgatgctgatattaggaatctcaaaccggatgaagcatat
gactgctgtctacaagccgtgcagatcttgcctcttgcagagtttcagattggtcttgca
aagcttggtttgtattctggtcaaatgccatcttcagaggtatttagagccatcaggcag
gctttgcagcgtgcaccccattatcctgaatctcacaatttgaatgggctaatatgtgaa
gcacgatctctttatcaaagtgctagtgcatcttttaggctagcacgccatgcagtgagc
tctttttctggcgaagtatcaaaattgtatcataaagatatttcaatgaaccttgtgagg
tctctttgtaaggcagggagtcccaatgaagctgttgaagagtgtgagttactgaagaaa
gaaggactgcttgatctggagggcttgcagatttatgctttatgtctgtggcaacttggc
aagaatgatctggctttattgacagctaggacacttgctgcaaatattttatcaatggat
agtagaaaggctgctgctactataagtttcatcagcagattgatgtattatatttctgga
caagattcagtgattagcagcatcttgaagatgcccaaggacttgtttcagagttcaaaa
gttagtttcatagtatctgctattgacgcactagattgtagtgatcagcttgggccaatt
gtttctcacagtcatacatctcttatgtcaagtgaagagattacatcaatgcactcccta
atagcgcttggtaaactagtgaaatatgtgtcggatgaccgccttggaattcagaatgga
gttgatcacctgagaaaagctcttcacatgtatccacacagtggtttgataaggaatctc
cttagttatctattactattcagcaaggaatggaaagatgttcatcttgcaactagatgt
tttatcgttgactcttatgaccatcaaaaggaaaaggttttaaaatccagcttcgagatt
cttggtgccggtgctgttgcttgttatactaagggaaggtgcaatgatgaattctcattc
tccaccagtaaagagcaatgcctttttggaactggaataatccagcagctacagaaggat
ttgcatcgagaaccttggaatgatagagcaaggtacttgcttatacttacttatgtgcag
aaggcacgtaaggagggatatcctcaacatctttgcactataattgaacggctaatatgt
gtggctctttctgatgaattctgttcaaggcaagaaagctcttatgaatatcaaaggttt
cagcttctgctttgtgctgcagaagtttgcttgcagtttggcaatcatattggctgtgtg
agacacgctaagagtgcttcagagcttttgcttcctgatgactctctcttttatgcacac
attttactttgtcgtgcctatgctgcacaagataattttgttgacatgcgcaaagagtat
acaagatgtttagaactcaaaactgattacccaattgggtgggtttgtcttaagataatt
gactgtcagtataagctacagactgatggcacctttttagcagtaggcttcgaggagtgc
tccagagatgtcaagaaatcctggaatatgtggatggctgttggtgatttggtccatggt
cttgttgctattcaaacaaaagatctcctagctgcagaaaagttcctagcacaagcctgt
tcattagccggtgatgagagctgcctctttctctgtcatggtaccatctgcatgcagcta
gccaaacagcagtgtgatgctcgattcttgtctctggctgttagaagtcttcagaaagcc
agagaaacttctgttatgttacctattgtctcactactgttggcacaagcagaagcaagc
cttggctctaaaatgaagtgggagaaaaaccttcgagatgaatggttttcttggccacca
gggatgaggcctgcagaactctattttcaaatgcatttgctagctaagcaggaaagagag
agttcaagatcttcttctcttatagagtcttctcagagtgctcaaagatgggttcttcaa
gcaatccatttgaacccttcttgtttgagatattggaaggttttgcagacctttacaggg
taa
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