Coffea arabica (coffee): 140036898
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Entry
140036898 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140036898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140036898
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140036898
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140036898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
TetR_C_8
Motif
Other DBs
NCBI-GeneID:
140036898
NCBI-ProteinID:
XP_071936089
UniProt:
A0ABM4WWC5
LinkDB
All DBs
Position
2e:22497173..22520385
Genome browser
AA seq
2421 aa
AA seq
DB search
MIPFALTASTQIRYLLQSLNASNSDAVLQELCQFTAYGVEGSILLLQTCLDHLNIHGKDF
KNVQFEPVFGSVFRYILDKPNFSTVFFQSVKNTINEEFLESLCNALHLSASERIAVGLAL
SDSENLDIRLYGKNFCMAQIAELCADQMPVDSVEQIQQILMFLHRSEGLSKHVDAFMRML
SLVQLKEGTQFILAPLFSDELREANFFRNLNFSNQNDEDDFDAVLAEMEKEMCMADILKE
LGYGCTFSVSECKEMLSLFSPLTEITVARMLGTISRTYTGLEDNQNVFSTFRSALGSSSS
SDMPTLNSWNPDVLVDSIKELAPEINWTAVIENLDHEGFYVPSEAAFSFFMSVYHRACQD
PFPLHAVCGSVWMNTEGQLSFLKYAVAVPPEVFTFAHSGRQLAYLDAVNGHKFQLGHANH
AWLCLDLLEVLCQLAERGHASTVRSILEQPLKQYPEILLLGMAHVNTAYNLIQNEVSSAV
FSVILKNSAGNSMLLHLWHVNPSMLLRGFADALNADQENVNRVLDACLELKILSPVLDMI
PSSFAIRLAAVASRKEPIDLEKWLTANLMTYKDAFYEECIRFLKEVQLAAQEVSANHFQP
SGAMWNICSETSSTFLKVLQSHTDQLTSGHLPEELEKLHELYMHANSRQKNGSNADPSST
DGFPADIESEANSYFQQMFSGQLTIDAMIQMLARFKESPEKREQSIFECMIANLFEEYKF
FSKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFAFGTKALEQF
VDRLIEWPQYCNHILQISHLRANHSELVAFIERALARISAAHSESDALHGAAGDQHGAIQ
ASSPNMEMSSSSFPLVGSSHSQQGLQVSSAIQLPQRQQNQLDERKTSGSLPNFLKPALSS
ASQAAGPLASDTSGIQKSQNAVSALAAHTSSPGFVRASRAITSARFGSALNIETLVAAAE
RRETPIEAPASEIQDKISFIINNLSAANVEAKAKEFTEILKDQYYPWFAQYMVMKRASIE
PNFHDLYLKFLEKVNSKQLTKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKI
TIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPSQGSIAYRPPNPWTMGILG
LLVEIYAMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDKVREVEGNPDFSNKDVGSS
QQQMGEVKSSMIPAINQVELPLEVTGPAHPGGHSRVLSQYGGPAPMHLSSGALAEDEKLA
ALGLSDQLPSAQSLLQGQSPFSVNQQLAAPASNIEQQVIVNSKLHTLGLHLHFQSVLPIA
MDRAIKEIVSNIKQRSVSIATQTTKELVLKDYAMETDETRIRNAAHLMVASLAGSLAHVT
CKEPLRASISSQLRNSLQGLNIASELLEQAVLLVTNDNLDLGCALIEQAATEKAIQTIDG
EIAQQLAIRRKHREGVGPTFFDASLYTQGHMGVLPEALRPKPGRLSHSQQRVYEDFVRLP
WQNQSTQSSNALPVGPLVSSTSSSVSRGYMQASGQLNAGVYSSGAVSSGMGSVPQPLDVT
SDDLDTSLTQIQSVSSAHVGLADSVSPRNVESENVVASFSSVPTELQSVESVVKEPGTAM
QQLNQSSASERSGSSVPEPLSTTGDALDKYQVFAEKLENLLTGDAKEAEIQGVIAEVPAI
ILRCISRDEAALAVAQKAFKALYENASNMAHVSAHLAILAAMRDVSKLVVKELTSWVIYS
EEERKFNKDITVGLIRSELLNLAEYNVHIAKLIDGGRNKAATEFAISLIQTLVIGDTRVI
SELHNLVDALAKLAARPGSPESLQQLVEIVKNPSTAALSGIAIGKDDATRQVKDKKGAVL
SAASREEYGAGADSVEPDPAGFREQVSMLFAEWYRICELPGANDGACAHYVLQLQHNGLL
KGDDTSDRFFRRLTDLSVSHCLTSEVIGSGPSQSHQTQPLSFLAIDIYAKLVYSVLKFCS
VDQGSSKLFLLPKVLAVTVKFIQKDAEEKKTSFNPRPYFRLFINWILDLCSLEPVFDGAN
FQVLTALANAFHALQPLKVPGFSFVWLELVSHRSFMPKLLAGNAQKGWPYIQRLLVDMFQ
FMEPFLRNAELGEPIHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIIL
SAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKNDVDEYLKTRQQGST
FLTDLKQKLLLSPNDAARAGTRYNAPLINSLVLYVGMQAIQQLQARTPPHAQSMASSVPL
AVYLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEM
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRTFTRCAPEIEKLFESVSRS
CGGPKPVDESVVSGGIPDNMH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgtttgctttgaccgcgtctactcagattcggtatctgctgcagagcttgaac
gcctccaactccgatgccgtcctccaagaactctgtcagttcactgcatatggagttgaa
ggaagcatattgttacttcagacttgcttggatcatctaaatattcatgggaaagatttt
aagaatgtgcaatttgaaccagtgtttggttcagtgtttagatatatcctggataagccc
aatttcagcacagtgttctttcaatctgtaaagaatacaatcaatgaagaatttctggaa
agtctttgtaatgctttgcacctctcagcatctgagaggattgcagttggtcttgctctg
tcagattcagagaaccttgacattagattgtatggaaaaaacttctgcatggctcagatt
gcagaattatgtgccgatcaaatgcctgttgactctgtggagcaaattcagcagattctg
atgttccttcatcggtctgaaggcctttcaaagcatgtagatgcatttatgcggatgtta
tctctcgtacaattgaaggagggcacacagttcatcttagctccactcttttcagacgaa
cttcgtgaggctaacttcttcaggaacttgaatttttccaatcaaaatgatgaggatgat
tttgatgctgtcctagctgaaatggagaaggaaatgtgtatggctgatatattgaaggaa
ttgggatatggttgcacatttagcgtttcagaatgcaaagagatgttgtctcttttctca
ccacttactgagatcactgttgctaggatgcttggtacaatttcccgtacctatactggc
cttgaggacaatcaaaatgttttctcaacgttccgttcagcccttggtagcagcagttca
tctgatatgcctactttgaactcttggaatcccgatgtcctcgtagattcaatcaaggag
cttgctcctgaaattaactggacagctgttattgaaaacctggatcatgagggattttat
gtccctagtgaggctgctttttcatttttcatgtctgtttatcatcgtgcatgccaggat
ccctttcctcttcatgctgtttgtggctctgtttggatgaatactgagggccagctctct
tttcttaagtatgctgttgcagtacctcctgaagtgtttacttttgcacattctggcagg
cagttggcttatctagatgctgtgaatggccacaagtttcaacttggacatgcaaatcat
gcgtggttatgccttgatcttttggaggttctgtgccagctggctgagaggggtcatgca
agtactgtgcgatccattcttgagcaacctctaaagcagtatccagaaatcttgctcctt
gggatggctcatgttaatactgcatataatctcatccagaatgaagtgtcttcagctgtg
ttctccgtgatactcaagaattcagcagggaatagtatgcttcttcatttgtggcatgtc
aaccctagcatgctgttgcggggatttgcagatgctcttaatgctgaccaggagaatgta
aatagggttttggatgcctgcctggagctgaagattctatctccggtgctggatatgatt
ccttcttcttttgctattagacttgctgcggttgcttctagaaaggaacctattgaccta
gagaagtggttgaccgcgaacttaatgacatacaaggatgctttctatgaggagtgcata
agatttctaaaggaggttcagcttgctgctcaggaagtttctgctaaccacttccaacct
tctggtgccatgtggaatatttgttcagagacttcttctaccttcttaaaggtccttcaa
tcgcatacagaccagttaacctcaggccacttgcctgaagaattggagaaattgcatgag
ttatatatgcatgccaattctagacagaaaaacggtagcaatgctgatccgtcatcaact
gatggttttcctgctgacattgaatctgaagcaaactcttatttccagcaaatgttttct
ggtcaactgaccattgatgcaatgattcaaatgcttgctcgtttcaaagaatctccagag
aaaagggaacaatcaattttcgagtgcatgatcgctaatttatttgaggagtacaagttt
ttctccaagtatcctgaaaggcagctcaagattgctgcagttctttttggatctcttatc
aagcatcaattggtgacgcatctcacgcttggtattgctttgcgggctgttttggatgca
ttgcgcaaacctgcagattcgaaaatgtttgcctttgggactaaggctctggaacagttt
gtggatcgcctgattgagtggccacagtactgcaatcatatcttacaaatatctcatcta
cgtgctaatcattcagaacttgttgcttttattgagagggcgcttgcccgaatctctgcc
gcacattcagaatctgatgcacttcatggtgctgctggtgatcaacatggtgctattcag
gcatcttcccctaacatggaaatgtcaagctcatcatttcccttggttggatctagtcat
tcacaacaaggcctgcaagtttcttctgcaatccagctcccacagaggcagcaaaatcaa
ttagatgagcggaaaacctctggaagcctgcccaatttcttaaaacctgctttatcctct
gcaagccaagctgctggtcccctagcaagtgatacttctggcattcagaagtcacaaaat
gcagttagtgccttggctgcacacacttcatctcctggttttgttcgtgcatcacgtgcc
attacctcagcaaggtttggctctgctttaaatattgaaacacttgttgctgctgcagag
agaagagaaactcctatagaggctccagcatcagagattcaggataaaatatcatttatt
atcaataatctatctgctgcaaatgttgaagctaaagcgaaagaatttactgagatatta
aaagatcaatactatccctggtttgctcagtatatggtgatgaaaagggcgagcattgag
ccaaattttcatgacttgtacttgaagtttctggagaaagtgaattcaaagcaattaacc
aaagagattgtgcaagcgacctatgagaattgcaaggttcttttgggatcagagcttata
aaatcaagttcggaagagcgttcgttgctaaaaaatcttgggagctggcttggaaagatc
accattggcaggaatcaagtattgagggcacgggagattgatcccaaatccttgattata
gaggcatatgagaaaggattgatgattgcagtcattcccttcacctccaaggttctggaa
ccaagccaaggtagcatagcatatcgaccccctaacccatggaccatgggtattcttgga
ttgcttgtagagatttatgctatgccaaatttgaagatgaacctaaagtttgacattgag
gtgttgttcaagaaccttggtgtggatatgaaagacgtaactcctacttctctccttaag
gataaggtcagagaagttgaaggaaaccctgatttttccaacaaggatgtcggatcttcc
caacaacagatgggtgaagtcaaatctagcatgatacctgcaataaatcaagttgagctg
cctcttgaggttactggtccagcacatccaggcggacactcacgcgtattatctcagtat
ggtggccctgcccctatgcatctttcatctggggcattggcagaagatgagaagctagct
gctctaggattatctgatcagcttccttctgcacaaagtcttctacaggggcagtcacca
ttctctgtcaatcagcagcttgctgcaccagcatctaacattgagcaacaagtgattgtc
aattcaaagcttcatacattaggcttgcacttgcactttcagagtgtacttccaatagcg
atggatagagctatcaaggagatagtttccaacattaaacaacgaagtgtttctattgca
actcaaacaactaaagaacttgttttaaaggactatgctatggagacagatgagacacgc
atacgtaatgcagcacatcttatggttgcaagtttagcaggaagtttagctcatgttact
tgcaaggaacccttgcgagcctcaatatcaagtcagctcaggaattcactgcagggcctg
aatattgcaagtgaactccttgaacaagctgttttacttgtgaccaatgacaatcttgac
ctgggttgtgcactgattgaacaagctgccacagagaaggcaatacaaaccattgatgga
gaaatagctcagcagctagctataagaaggaagcatagagagggcgttggtccaacattt
tttgatgcaagcctctatacgcaaggtcatatgggtgttttgcctgaagctcttcgtcct
aaaccaggccgcctgtcccattctcagcagcgagtttatgaggattttgtgcgtttaccc
tggcaaaatcaatctacccagagctcaaatgcattgcctgttggccctctagtatcatct
acaagcagtagtgtttcgcggggatacatgcaagcttcagggcaattaaatgctggagtt
tactcttctggagcagtaagctcaggaatgggttctgttccacagcccttggatgttacg
tccgatgatctggatacaagtttgactcagattcaaagtgtttcatcagctcatgttggg
ttggctgacagtgtcagtccacgcaatgttgaaagtgaaaatgtagttgcatcattttct
tcagtgcctactgaactacagtcagttgaatctgttgtgaaagaaccaggaacagcaatg
cagcaactcaatcagtcttcagcttcagagcgctctggaagcagtgtaccagaaccatta
tctaccactggtgatgcactggataagtatcaggtttttgctgagaagcttgaaaatctg
ttgactggtgatgccaaagaagcagagattcagggagtaattgctgaagttccagcaata
attttaagatgtataagtcgagatgaagctgcattggctgtggctcaaaaggctttcaag
gctttgtatgaaaatgcatcaaatatggcacatgtcagtgctcatcttgctatcttggct
gccatgcgtgatgtcagcaagcttgttgttaaggagctcactagttgggtgatttactct
gaagaggagcgcaagtttaacaaagatataacagttggtctcatacgaagtgaactacta
aaccttgctgagtacaatgtgcatatagccaagctcattgatggtggaaggaataaggct
gctactgaatttgctatttctcttattcaaaccttggttattggtgataccagagtcata
tcagagctgcataacctggttgatgcattggctaagcttgctgctagaccaggatctccc
gagtctttacagcagcttgttgagattgtgaagaatccatctacagctgctttgtctggt
attgctattgggaaggatgatgccacccgacaggtcaaagacaaaaagggggcagtgctc
tctgcagcaagcagggaagagtatggtgcaggagcagattctgttgaaccagatcctgct
ggctttcgtgagcaggtttccatgctatttgcggagtggtatcgaatttgtgaacttcct
ggggctaatgatggagcttgtgcacattatgttttacaattacagcacaatggcctactt
aaaggagatgatacctcagatcgctttttccgccgcctaacagatctttcagtttcacat
tgcctaacttctgaggtgattggatctggtccttcccaatcacatcaaacacaaccttta
tcattccttgctattgatatctacgccaaattagtatactcagttctgaagttttgttct
gtagaccagggatctagcaaattatttcttcttcctaaggttcttgcggtgaccgtgaag
ttcattcagaaggatgctgaggagaagaaaacatcctttaatccaagaccatattttagg
ctcttcattaactggatcttggatttgtgttctctggaacctgtttttgatggcgcgaac
tttcaggtattgactgctttagcaaatgccttccatgctctccagccccttaaagttcca
gggttcagctttgtgtggcttgagctggtgagtcatagaagcttcatgccaaaattactt
gccggaaacgctcagaaagggtggccatacatccagcgcctcttagttgacatgtttcag
ttcatggagccatttttgagaaatgctgagcttggagaaccgatccattttctctataaa
gggacactaagggtgttgctggtgctgcttcatgattttcccgaattcctatgtgattat
cactttagcttctgtgatgtcatccctcctagttgcatacagatgcgaaacattatcctg
agtgcatttcctcgcaatatgaggctacctgatccctcaactccaaacttaaagattgat
cttctggcggagattagtcaatcaccacggattctatcggaggttgatgctgcacttaaa
gcaaagcagatgaagaatgatgtagatgaatacctaaagacaaggcaacaagggtctaca
tttctcactgatttaaagcagaaacttctgctttctccaaatgatgctgccagagctgga
actcgttacaatgcaccgctcatcaattcccttgtgctgtatgttgggatgcaggctata
cagcagctgcaggcaagaaccccacctcatgcacagtcaatggccagtagtgttccactt
gctgtttatctggttggtgctgctctggatatcttccagacattaataatggatctagac
actgagggacgttatctcttcttgaatgcggttgctaaccagttgcgttatccaaacaac
cacacacactacttctctttcatcttgctctacctatttgcagaatcaaaccaggagatg
attcaggagcaaatcactagggtattgttggagcgcctaattgtcaataggccacatcct
tggggtttgctgattacttttattgagcttattaagaatcctaggtacaacttctggagc
cgtactttcactagatgtgcaccagagattgagaaactctttgaatctgtttcgagatct
tgtggtggtcctaaacctgtcgatgaaagtgtagtttctggtgggatacctgacaacatg
cattaa
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integrated database retrieval system
