Coffea arabica (coffee): 4421747
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Entry
4421747 CDS
T11342
Symbol
rpoB, CoarCp013
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4421747 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
4421747 (rpoB)
03400 DNA repair and recombination proteins [BR:
carb03400
]
4421747 (rpoB)
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4421747 (rpoB)
Transcription machinery [BR:
carb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4421747 (rpoB)
DNA repair and recombination proteins [BR:
carb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4421747 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-GeneID:
4421747
NCBI-ProteinID:
YP_817474
UniProt:
A0A327
A0A1W6CCE2
LinkDB
All DBs
Position
Pltd:complement(23987..27187)
Genome browser
AA seq
1066 aa
AA seq
DB search
MLGDGNEGMATIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYELLTYSSELYVSAGLIWKTGRDMQEQTIFIGNIPLMNSLGTFIVNGVYR
ILINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLNDKERKKIGSKENAILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNPFLLPRDILAAADHLIGLKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENAVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDGTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLSIHARIGHWGFLESPFYEISERRVLFLLPGRDEYYKVAAGNS
LALNQDIQEKQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALM
SSNMQRQAVPLSRSEKCIVGTGLEQQAALDSGALSIAEREGKVLYTDTDKILLSGNGGTL
SIPLVMYQRSNKNTCMHQKPRVQRGKCIKKGQILADAAATVGGELSLGKNVLVAYMPWEG
YNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERVTNEIPHLEAHLLRNLDKSG
IVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGR
VIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILTRQDMPYLQD
GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSEL
YQASKQTANPWVFEAEYPGKSRIFDGRTGNPFEQPVLIGKPYILKLIHQVDDKIHGRSSG
HYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTI
VGGTIPNPEDAPESFRLLVRELRSLALELKHFLISEKNFRIHRKEA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatggaaatgagggaatggctacaatacctggatttaatcagatacaattt
gaaggcttttgtaggtttattgatcagggtttggcggaagaactttataagtttccaaaa
attgaagatacagatcaagaaatcgaatttcaattatttgtggaaacataccaattagta
gaaccattgataaaggaaagagatgccgtgtatgaattactcacatattcttcggaatta
tatgtatccgcaggattgatttggaaaaccggcagggatatgcaagaacaaacaattttt
attggcaacattcctctaatgaattccctaggaacttttatagtaaatggagtatataga
attttgatcaatcaaatattgcaaagtcccggtatttattaccggtcagaattggaccat
aacggaatttctgtctataccgggaccataatatcagattggggaggaagatcagaatta
gagattgatagaaaagcaaggatatgggctcgtgtgagtaggaaacaaaaaatatctatt
ctagttttatcatcagctatgggttcgaatctaagagaaattctagagaatgtttgctat
cctgaaatttttttgtcttttctgaatgataaggagagaaaaaaaattgggtcaaaagag
aatgccattttagagttttatcaacaatttgcttgtgtaggcggagatccggtattttct
gaatccttatgtaaggaattacaaaaaaaattctttcaacaaagatgtgaattaggacgg
attggtcgacgaaatatgaaccgaagactgaaccttgatatccctcagaacaacccattt
ttgttaccacgagatatattggcagccgccgatcatttgattggactcaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataaacgtattcgttctgtagcggatctt
ttacaagatcaattcgggttggctctggttcgtttagaaaatgctgttcgaggaactata
tgtggagcaattcgacataaattgataccgacccctcaaaatttggtaacttcaactcca
ttaacaactacttatgagtctttttttggtttacacccattatctcaagttttggatgga
accaatccgttgacacaaatagttcatgggagaaaattgagttatttgggccctggagga
ctaacagggcgaactgctaattttcggatacgagatatccatcccagtcactatgggcgt
atttgcccaattgacacatctgaaggaattaatgttggacttattggatccttatcaatt
catgcgaggattggccattggggatttctagaaagcccattttatgaaatttctgagaga
cgggtgctttttttattgccgggtagagatgaatactataaggtagcggcagggaattct
ttggccttaaatcaagatattcaggaaaaacaggttgttccagctcgataccgtcaagaa
ttcctgactattgcatgggaacaggttcatcttcgaagtatttttcctttccaatatttt
tctattggagcttccctcattccttttattgaacataatgatgcgaatcgggctttaatg
agttcaaatatgcaacgtcaagcagttcccctttctcgatccgagaaatgcattgttgga
actgggttggaacaacaagcagctctagattcaggggctctttctatagccgaacgagag
ggaaaggtcctttataccgatacggacaaaatccttttatcaggtaatgggggtactcta
agcattccattagttatgtatcaacgttccaacaaaaatacttgtatgcaccaaaaacca
cgggttcagcggggtaaatgcattaaaaagggacaaattttagccgatgctgctgctacg
gttggtggcgaactttctttgggaaaaaacgtattagtagcttatatgccatgggaaggt
tacaattttgaagatgcagtactcattagcgagcgtttagtatatgaagatatttatact
tcttttcacatacggaaatatgaaattcagactcatgtgacaagccaaggtcctgaaagg
gtcactaatgaaataccccacttagaagcccatttactccgcaatttagacaaaagcgga
attgtgatgttgggatcttgggtagaaacgggtgatattttagtaggtaaattaacgcct
cagatggtgaaagaatcttcctatgccccggaagatagattattacgagccatacttggc
attcaggtatctacttcaaaagaaacttgtctaaaactacctataggcggtaggggtcgg
gttattgatgtgagatggatccagaaaaaggggggctctagttataatccagaaatgatt
cgtgtatatatttcacagaaacgtgaaatcaaagtaggcgataaagtagctggaagacac
ggaaataagggtattatttcaaaaattttgactagacaagatatgccttatttgcaagat
ggaagacctgttgatatggtcttcaacccactaggagtaccttcacgaatgaatgttgga
cagatatttgaatgttcattggggttagcgggaagtctgctagacagacattatcgaata
gcgccctttgatgagaggtatgaacaagaagcttcgagaaaactggtgttttctgaatta
tatcaagctagtaagcaaacagcgaatccatgggtatttgaagccgagtatccaggaaaa
agcagaatatttgatggaagaacggggaatccttttgaacaacccgttctaataggaaag
ccttatatcttaaaattaattcatcaagttgatgataaaatccacggacgttcaagtgga
cattatgcacttgttacacagcaaccccttaggggaagggcaaagcaggggggacaacgg
gtaggagaaatggaggtttgggctctagaagggtttggtgttgctcatattttacaagaa
atgcttacttataaatctgatcatattagagctcgccaggaagtacttggtactacgatc
gttggaggaacaataccgaatcctgaggatgctccagaatcttttcgattactcgttcga
gaactacgatccttagctctagaactgaaacatttccttatatctgagaaaaacttccgg
attcataggaaggaagcttaa
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