Carnobacterium sp. CP1: NY10_1648
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Entry
NY10_1648 CDS
T04230
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NY10_1648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carc03021
]
NY10_1648
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_1648
Enzymes [BR:
carc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NY10_1648
Transcription machinery [BR:
carc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NY10_1648
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NY10_1648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
DUF961
Motif
Other DBs
NCBI-ProteinID:
ALV22247
LinkDB
All DBs
Position
complement(1703924..1704868)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPRIETIEISDDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTTIQIDG
VLHEFSAVDGVLEDVTSIILNIKKLALKLYSGEDKTIEIDVKGPAVVTAADIVYDSDVEI
LNPDLYICTVAEGARFHVRMTAKTGRGYARAEHNKQDDMPIGVLPIDSIYTPVSRVNYQV
ENARVGQKDIFDKLTLDVWADGSISPEEAVSLAAKILTEHLNIFVNLTDEARKAEIMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINSVQELTDKSEAEMIKVRNLGRKSLEEVK
FKLSELNLNLRQDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaattgaaaaaccaagaattgaaacgattgagatcagcgatgatgctaagttt
ggtaaattcgttgtagagccacttgaacgcggttatggaacaacgctaggaaactctcta
cgtcgtatcttgttgtcttctctaccgggagcagcagtaaccactattcaaattgatggt
gttttacacgagttttcagctgtcgatggtgtacttgaagatgtaacgtcaatcatttta
aacataaaaaaacttgcactcaagttatattctggtgaagataaaacgattgaaatcgat
gtaaaaggtccagcagttgtcacagcagctgatatcgtttacgatagcgatgttgaaatc
ttgaaccctgacttgtacatttgtactgtagcagaaggcgcgcgtttccacgttcgcatg
acagctaaaacgggtagaggttatgcaagagctgaacacaataaacaagatgatatgcct
attggcgtattgccaatcgattcgatttacaccccagttagtcgtgtaaactaccaagta
gaaaacgcacgggttggtcaaaaagatatttttgataaattaacgcttgatgtatgggca
gatggttctattagcccggaagaagctgttagtcttgcagctaaaattctaactgaacat
ttaaatatcttcgtgaatctaaccgatgaagctcgtaaagctgaaatcatggtagaaaaa
gaagaaacgcataaagaaaaaatgcttgaaatgactattgaagaacttgatttatctgta
cgttcatacaactgtttgaaacgtgctggaattaattctgttcaagaattaaccgataaa
tcagaagctgaaatgatcaaagtacgcaatctaggacgtaaatcacttgaggaagttaaa
tttaagttatctgaacttaatttaaacttacgtcaagacgattag
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