Clostridium asparagiforme: NQ535_24390
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Entry
NQ535_24390 CDS
T08571
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ535_24390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
casp03021
]
NQ535_24390
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_24390
Enzymes [BR:
casp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ535_24390
Transcription machinery [BR:
casp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ535_24390
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ535_24390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
RAD51D_N
PASTA
Hpr_kinase_C
Motif
Other DBs
NCBI-ProteinID:
UWO75908
LinkDB
All DBs
Position
complement(5409612..5410574)
Genome browser
AA seq
320 aa
AA seq
DB search
MFDFEKPNIEIAEISEDKRYGKFVVEPLERGYGTTLGNSLRRIMLSSLPGAAVSQVKIDG
VLHEFSSIAGVKEDVTEIIMNIKSLAIKNNSDTDEPKVAYIEFEGEGVITAADIQADADI
EIMNPDQIIATLSGGTDSKFYMELTITKGRGYVSADKNKNDDLPIGVIAVDSIYTPVERV
NMAVANTRVGQQTDYDKLTLEIYTNGTLAPDEAVSLAAKVLSEHLNLFIDLSENAKTAEI
MVEKEDNEKEKVLEMNIDELELSVRSYNCLKRAGINTVEELCNRTSEDMMKVRNLGRKSL
EEVLAKLKELGLQLNPSDND
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgattttgaaaaacccaacattgaaatcgcggagatttcagaagacaagagatat
ggcaagttcgtagttgaaccacttgagagaggttacggcactacactgggcaactccctg
agaagaattatgctttcttccctgccgggtgcagcagtgagtcaggtaaaaatcgatggc
gttttgcatgagttcagttctatcgccggtgtcaaggaagatgtaactgagatcattatg
aacatcaaaagcttagcgatcaagaacaacagcgataccgacgagcccaaggttgcttac
attgagttcgaaggcgagggcgtgattaccgcagccgacattcaggcggacgcggacatc
gagatcatgaatcccgatcagatcatcgcgaccttgagcggcggcacggacagcaagttc
tacatggaacttacgatcaccaagggccgcggctatgtcagcgcagataagaataagaac
gacgatttacccatcggggtgatcgcagtcgattccatctacactccggtggagcgtgtg
aatatggcggtggcgaacacccgtgtcggccagcagacagactacgacaagctgacattg
gagatctacaccaatggcactcttgcacctgacgaggcagtcagcctggccgcgaaggta
ctcagcgagcacttaaacctgtttatcgacctctccgagaacgccaagacagcagagatc
atggtggagaaggaagacaacgagaaggaaaaagtgcttgagatgaatatcgacgagctg
gagttgtccgtccgttcttacaactgtttgaagcgggctggaatcaataccgtggaagag
ttgtgcaaccgcacttccgaggatatgatgaaggttcgtaacctgggccgcaagtccctt
gaggaagtgttggccaagcttaaggaattaggcttgcagcttaatcccagcgacaacgac
taa
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