Cygnus atratus (black swan): 118246585
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Entry
118246585 CDS
T09349
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118246585 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118246585 (CNOT1)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118246585 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118246585 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118246585
NCBI-ProteinID:
XP_035399664
LinkDB
All DBs
Position
12:complement(12728617..12788618)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYACHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSSVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacgaaaccgaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatatttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagttcatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcatttggggtgggacag
gaacaaattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgtccgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcagggttgacagatggtattccgttacaatctatttcggctcctggcagtgggatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttagaccacccgggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagaggcttgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagaaggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacgcttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgatcgaatctctgttgcgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccggatatgttggtattggccttattgcagatcaacacttcctggcataccttgcgccac
gaactcatctccacgctcatgccaattttcctcggcaaccatcccaactcggccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgcatgactttctta
aagagaagatgtccatctatcttgggtggccttgctccggaaaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcatgtctgcaagcttgtgctggg
agtgtttcccaggagctgtcagagacgatactcaccatggtggctaactgcagtagcgtc
atgaacaaggctaggcagccgccacctggagtcatgccaaaaggacgcccacctagtgcg
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggcatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccgaatttg
ggctctgcattcagtactcctcagtcaccagcaaaagcgtttccccctctttccacccaa
aaccagacaacaggtttcagtggcattggaggactctcttcacaacttccagtaggtggt
cttactacgggtagcctgactggtataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttataaccatccacca
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaagattccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttacaggagtacatagaatacggacaacagtctagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcacaatcactcgaccaactggagtc
agcttcaagaaggatgtgccgccttccattaataccaccaatattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaacatgactcagaaggtcgaagaactgaaggag
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaaaagagtcagt
attgagccaaattttcacagcttatattcaaactttcttgacactcttaagaatccagag
tttaataaaatggttctgaatgaaacttacagaaacatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaatcttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacggatttggatgtgaaatcactg
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagcgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgacctaaaattgaatctgaag
tttgagattgaagtgctctgcaagaatcttgcattagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagctctccgctccaaag
aaagatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcac
gacatcaacgtctattctttaggagggttggctccacatattaccttaaatcctacgatc
ccgctgttccaggcccacccccagctgaagcagtgtgtacggcaggctatcgagcgagca
gtgcaagagctcgtccatcctgtggttgatcggtccattaagattgccatgacgacatgc
gaacagatagtcaggaaggactttgcgctggattcggaggagtcacggatgcgtgtggcc
gcacaccatatgatgcggaacctgactgccgggatggccatgataacctgcagggaacct
ttgctcatgagcatagctaccaacctgaagaacagctttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagctagcgcaggacaactgt
gagctagcgtgctgctttatccagaagacagctgtggaaaaggcaggccctgaaatggac
aagaggctagcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttacgaagagtttgcacgcaatgtccct
ggctttttgcctaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtggcacaaatctatgacaaatgtatgacagaactggag
caacacctgcagtccattccacataccctggccatgaatcctcaagctcaagcactgcgc
agcctcttggaggctgtagtagtggctcgtaactcccgtgatgctatcgctgcgcttggg
ctgctacagaaggctgtagagggcttactggatgccaccagcggggcagatgcagacctc
ctgcttcgctaccgtgagtgtcatctgcttgtgctgaaggctctgcaggacggtcgtgca
tatggatctccgtggtgtaataaacaaattactaggtgcctgattgaatgcagggatgag
tacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcaa
cagtacgatcttcacttggctcagtcaatggagaatggcttgaactacatggctgtggcg
tttgccatgcagttggtaaagatcctgttggtggatgagagaagcgtcgcgcatgttacg
gaggcagacctgttccacacgattgagacacttatgaggattaatgctcattccagagga
aatgccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagccatg
attgaccgtgctcatggaggtcccaatttcatgatgcattctggaatttcccaagcctct
gagtatgatgatccgccaggcctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcggctgcagcgggccgcgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacggatgac
ctgatcacccgctttttccgtctttgcaccgaaatgtgtgttgaaatcagctatcgtgct
caggctgagcaacagcacaatcctgctgccaaccccactatgattcgagcgaagtgctat
cacaatctggatgcctttgtgcgacttattgcactgctggtgaagcactctggagaggca
accaacaccgtcacaaagatcaacctcctgaacaaggtccttggtattgtggtgggagtt
cttttacaagaccatgatgttcggcagagtgagtttcagcagcttccttaccatcgcatc
ttcatcatgttgctgttggaattaaatgctcctgagcatgtgcttgaaaccatcaacttc
cagacactcacggctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttactgatcgatcttttcaag
tacttggctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttacaag
ggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgactac
cactatgggttctgtgatgtgatcccacccaactgtattcagctaaggaatctgatcctg
agtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtggac
atgttaagtgaaattaatattgctccacgaatactcaccaatttcactggagtgatgcca
cctcagttcaagaaagacctggattcctatctcaaaacccgttctccagttacttttctg
tctgacttgcgcagcaacttacaagtatcaaatgaacctggcaaccgctacaacatccag
ctgattaatgcactggtgctctacgtgggtactcaagctattgcgcacatccacaacaaa
ggcagcacaccgtctatgagcaccattacccactcagcacacatggacatcttccagaat
ttggctgtagacctggacactgaaggtcggtacctcttcttgaacgcaatcgccaaccag
ctgcgatatcccaacagtcacacccactacttcagttgcaccatgctttacctgtttgca
gaggccaacactgaggctatccaggagcagatcactagggttctcttggaacgactgatt
gtaaataggcctcatccctggggtctccttattactttcattgagctgataaaaaatcca
gcgtttaaattctggaaccatgagtttgttcactgtgctccagaaattgagaagttgttc
cagtcggttgcacagtgctgcatggggcagaagcaggctcagcaagtgatggaagggacg
ggtgccagttag
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integrated database retrieval system
