Cygnus atratus (black swan): 118248986
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Entry
118248986 CDS
T09349
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04510
Focal adhesion
cata04512
ECM-receptor interaction
cata04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118248986 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118248986 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118248986 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cata00535
]
118248986 (COL9A3)
Proteoglycans [BR:
cata00535
]
Extracellular matrix (ECM) proteoglycans
Others
118248986 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118248986
NCBI-ProteinID:
XP_035404381
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Position
16:complement(3066038..3101281)
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AA seq
675 aa
AA seq
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MTVFPTLGLLFLCQLLATTSAQRVGPQGPPGPRGPPGPSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGAAGEAGLPGLPGVDGLTGTDGPPGPNGPPGDRGALGPAGPPGQAGKGLPGPPG
PPGPSGLPGGNGFRGPPGPYGLPGFPGPPGPPGPPGLPGIFPDGGGDIQCPALCPPGPPG
PPGMPGFKGHTGHKGEPGEIGKEGEKGNPGPPGPPGIPGSVGLQGPRGLRGLPGPMGPAG
ERGDIGFRGPPGIPGPPGKAGDQGNKGPQGFRGPKGDTGRPGPKGNPGARGLIGEPGIPG
KDGRDGAPGLDGEKGDAARMGAPGEKGPNGLPGLPGRAGIKGSKGEPGSPGEMGEAGPSG
EPGIPGDVGIPGERGLPGPRGATGPLGLQGPMGAPGVRGFQGPKGASGEPGLPGPTGIRG
EFGDRGPTGVTGPKGNQGIAGADGLPGDKGELGPFGPPGQKGEPGKRGELGPKGVQGPNG
TAGVPGIPGHPGPMGHQGEQGVPGITGKPGPPGKEASEQHIRELCGEMINDQIAQLAANL
RKPLSPGMTGRPGPAGPPGPPGATGSVGHPGARGPPGYRGPTGELGDPGPRGDTGEKGDK
GPVGQGIDGPDGDQGLQGLPGVPGISKNGRDGAQGEPGLPGDPGTPGAIGAQGTPGICDT
SACMGAVGASTSKKS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactgtattccccactcttgggctcctcttcctttgtcagctattagccaccacctca
gctcagagagtaggaccacaaggccctcctggaccccgaggaccccctggaccatctggc
aaggacggcatagatggcgagccgggccctcctggtttgccaggcccaccagggccaaag
ggtgcaccaggaaagcctggagcagctggtgaagctggattgcctggccttcctggagta
gatggtttaacgggaactgatggcccacctggcccaaatgggcctccgggagaccgtggt
gcattaggacctgccgggccacctggacaagctggcaaaggactaccaggacctccaggg
cctccaggacccagtgggcttccaggtggaaatggatttcggggtcctcctggtccttat
ggtctgcctggattcccagggcctcctggaccacccggacctcccggtcttccaggcatc
tttcctgatggcggtggggacatccagtgcccagctctgtgcccaccgggtcctccaggt
cctccaggaatgccagggttcaagggacacactggtcacaaaggagaacctggtgaaata
ggaaaagaaggagagaagggcaaccctggccctccaggtcctccaggcattcctggcagt
gttggcctgcagggcccaagaggactaagaggcctccctggtccaatgggtccagctggt
gagaggggtgacattggtttcagagggccacctggaatcccaggacctccagggaaagct
ggagaccaaggaaacaaaggacctcaaggattcagaggacccaaaggtgacactggtaga
cctggaccaaaaggaaacccaggggcacgtggactcataggagaacctggcatacccggc
aaggatggacgggatggagctcctggactcgatggtgagaagggtgatgcagctcgcatg
ggtgctcctggagagaagggaccaaacggacttcctggactgcctggaagagcaggtatt
aaaggctcaaagggtgaaccaggcagtcctggagagatgggagaggcaggtccctctgga
gagccaggcatccctggtgatgtcggtattcctggtgagagaggtctgccgggacccaga
ggagcaactggcccgcttggtctccaaggcccgatgggagcccctggtgtcagaggtttc
cagggtcctaaaggtgccagcggggaacctggccttcccggtccaactggaattcgtgga
gagtttggtgacaggggccctaccggtgttactggtcccaaaggtaaccagggcattgct
ggagcagatggcctcccaggtgacaaaggagaactgggtccctttggtccccctggccaa
aaaggagagccaggaaaaagaggagaacttggtcccaaaggtgtccagggacctaacggg
acagctggagttccagggattccaggacacccagggcccatgggccatcaaggggagcaa
ggcgttcctggcatcacaggaaaacctgggcctcctggcaaagaggccagtgaacaacat
ataagagaactctgtggggagatgataaatgatcaaattgcccagttagctgctaacctg
aggaagcccttgtctccgggaatgacgggtcggcctggcccggctgggcccccagggcct
cctggggctacgggaagcgttgggcatcccggtgctcgtgggcctcctggctacagaggg
ccaacaggagagcttggggatcctggtcccagaggtgacactggcgaaaagggagataaa
ggacccgttggacaaggcatcgatggacccgacggcgatcaaggacttcaaggacttcct
ggtgtacctggaattagtaaaaatggtcgtgacggtgctcagggcgaacccggtcttcca
ggggatcctggtactcctggtgctattggggctcagggaactccaggaatatgcgacaca
tcggcttgcatgggagctgttggagcatcgacttccaaaaaatcataa
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