Cygnus atratus (black swan): 118251343
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Entry
118251343 CDS
T09349
Symbol
TRIM13
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM13
KO
K12003
tripartite motif-containing protein 13 [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118251343 (TRIM13)
04121 Ubiquitin system [BR:
cata04121
]
118251343 (TRIM13)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118251343 (TRIM13)
Membrane trafficking [BR:
cata04131
]
Autophagy
ER-phagy
Other ER-phagy associated proteins
118251343 (TRIM13)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118251343 (TRIM13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
zf-C3HC4_2
zf-C3HC4_3
TRIM_CC
U-box
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
118251343
NCBI-ProteinID:
XP_035409254
LinkDB
All DBs
Position
1:180194719..180205060
Genome browser
AA seq
416 aa
AA seq
DB search
MTLVLRDTMELLEEDLTCPICCSLFDDPRVLPCSHNFCRKCLEGILEGNVRNVLWRPSPF
KCPTCRKETPVTGVNSLQVNYSLKGIVEKYNKIKVTPKMPVCKVHSGQPLNIFCRTDMQL
ICGVCATRGDHTKHVFCSIEEAYSQEKRAFETLFQGFETWRCGDALSRLDTLETSKRKAL
QMLTKDSDKVKEFFEKLQHTLEQKRNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMA
FNIAEAFKDVSEPIIFLQQMQEFREKIKVLKETPLPCSNVDVSPTMKSFDTSQWNGIKLV
DVDKLSLPQENNTLKLKIPSVFSRRFIVTSLICLLLLAVTRMSFVESVVDNLQCWKSQFF
TISLSYLADTVEIADHAVFYWEQMTDGASLLREKCKNYTLVVLDNVAQFVCKYKLL
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaccttagtcctcagggatacgatggagctcctagaggaagatctcacctgtcccatt
tgctgcagcctgtttgatgatcctcgtgtcctgccctgttcgcacaacttctgcagaaag
tgtctggaaggcatactcgagggaaacgtgcggaacgtgctgtggaggccgtcccctttc
aagtgccccacgtgccggaaggaaacccctgtgacgggagtcaacagcttacaggtcaac
tattccctgaaaggcatcgtggagaagtacaacaaaatcaaagtcactcccaaaatgccc
gtgtgcaaagtgcacagcgggcagcccctcaacattttttgccggacggacatgcagctg
atctgcggggtttgcgccacccgcggcgaccatacgaagcacgtgttctgttccatcgag
gaagcttactcccaggagaagcgggctttcgaaaccctcttccagggctttgagacgtgg
cggtgcggggacgcgctctcccgcctggacactttagaaaccagtaagcgcaaagccttg
cagatgctgaccaaagattccgacaaggtgaaagagttcttcgagaagctgcagcacacg
ctggagcagaagcggaacgagattctctccgacttcgagaccatgaagctcgcggtgatg
caggcctatgacccggagatcaataaactgaacaccatcctgcaggagcagcggatggct
ttcaacatcgcggaggccttcaaggacgtgtccgagcccattatttttctgcagcagatg
caggagttcagggaaaaaatcaaggtgctcaaagaaaccccgttaccgtgttccaacgtg
gacgtcagccctacgatgaagagcttcgataccagccagtggaacgggataaaactggtt
gatgtggacaaactgtccttgcctcaggaaaacaacaccctgaaactgaagattccctcg
gtcttttcgcgcaggtttatagtaacctctcttatttgcttgcttcttcttgctgtcacc
agaatgtcctttgtggagtctgtcgttgacaatctccagtgctggaagtctcagttcttt
acaattagcctgtcttatttggcagatacagtggagatagcagaccatgccgtcttttac
tgggaacagatgacagatggagcttcacttctgagggaaaagtgtaaaaactatacgttg
gttgtactggataacgttgcgcagtttgtgtgcaaatataaactgttgtga
DBGET
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